Hb_000376_050

Information

Type -
Description -
Location Contig376: 112962-123681
Sequence    

Annotation

kegg
ID rcu:RCOM_0812530
description polyadenylate-binding protein, putative
nr
ID XP_002518733.1
description polyadenylate-binding protein, putative [Ricinus communis]
swissprot
ID Q9FXA2
description Polyadenylate-binding protein 8 OS=Arabidopsis thaliana GN=PAB8 PE=1 SV=1
trembl
ID B9RYE9
description Polyadenylate-binding protein OS=Ricinus communis GN=RCOM_0812530 PE=3 SV=1
Gene Ontology
ID GO:0000166
description polyadenylate-binding protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38350: 112851-123616
cDNA
(Sanger)
(ID:Location)		 031_C07.ab1: 112862-113023

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000376_050 0.0 - - polyadenylate-binding protein, putative [Ricinus communis]
2 Hb_000956_010 0.0503186455 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
3 Hb_002603_100 0.0597095629 - - ATATH9, putative [Ricinus communis]
4 Hb_004662_030 0.0597909862 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
5 Hb_001427_120 0.0615465195 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
6 Hb_001243_050 0.0627335232 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
7 Hb_021068_050 0.0630238427 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
8 Hb_002097_110 0.0635337169 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_000329_040 0.0642208032 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
10 Hb_000703_140 0.0661652 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
11 Hb_022250_040 0.0670171783 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
12 Hb_009711_030 0.0676281788 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
13 Hb_023386_080 0.0702667178 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
14 Hb_027472_180 0.0712953582 - - hypothetical protein L484_016229 [Morus notabilis]
15 Hb_007672_010 0.0719056188 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
16 Hb_021650_030 0.0745541464 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
17 Hb_011465_040 0.0750457188 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
18 Hb_000975_290 0.0758963822 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
19 Hb_000883_050 0.0764647688 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
20 Hb_002078_450 0.0765555335 - - nuclear transport factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000376_050 Hb_000376_050 Hb_000956_010 Hb_000956_010 Hb_000376_050--Hb_000956_010 Hb_002603_100 Hb_002603_100 Hb_000376_050--Hb_002603_100 Hb_004662_030 Hb_004662_030 Hb_000376_050--Hb_004662_030 Hb_001427_120 Hb_001427_120 Hb_000376_050--Hb_001427_120 Hb_001243_050 Hb_001243_050 Hb_000376_050--Hb_001243_050 Hb_021068_050 Hb_021068_050 Hb_000376_050--Hb_021068_050 Hb_000956_010--Hb_001427_120 Hb_006693_030 Hb_006693_030 Hb_000956_010--Hb_006693_030 Hb_000956_010--Hb_002603_100 Hb_022250_040 Hb_022250_040 Hb_000956_010--Hb_022250_040 Hb_023386_080 Hb_023386_080 Hb_000956_010--Hb_023386_080 Hb_002603_100--Hb_023386_080 Hb_002603_100--Hb_022250_040 Hb_002603_100--Hb_001243_050 Hb_001671_020 Hb_001671_020 Hb_002603_100--Hb_001671_020 Hb_002097_110 Hb_002097_110 Hb_004662_030--Hb_002097_110 Hb_009711_030 Hb_009711_030 Hb_004662_030--Hb_009711_030 Hb_133271_020 Hb_133271_020 Hb_004662_030--Hb_133271_020 Hb_015001_020 Hb_015001_020 Hb_004662_030--Hb_015001_020 Hb_004662_030--Hb_022250_040 Hb_001718_100 Hb_001718_100 Hb_001427_120--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_001427_120--Hb_000086_570 Hb_071736_020 Hb_071736_020 Hb_001427_120--Hb_071736_020 Hb_001427_120--Hb_022250_040 Hb_006447_010 Hb_006447_010 Hb_001243_050--Hb_006447_010 Hb_001243_050--Hb_001671_020 Hb_001243_050--Hb_022250_040 Hb_002307_030 Hb_002307_030 Hb_001243_050--Hb_002307_030 Hb_021068_050--Hb_002603_100 Hb_024835_030 Hb_024835_030 Hb_021068_050--Hb_024835_030 Hb_021068_050--Hb_022250_040 Hb_004012_010 Hb_004012_010 Hb_021068_050--Hb_004012_010 Hb_026198_050 Hb_026198_050 Hb_021068_050--Hb_026198_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
705.472 215.075 111.72 179.76 686.316 752.717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
850.543 1085.36 852.079 256.307 125.864

CAGE analysis