Hb_006693_030

Information

Type -
Description -
Location Contig6693: 48985-62004
Sequence    

Annotation

kegg
ID rcu:RCOM_1539780
description ribonuclease hi large subunit, putative (EC:3.1.26.4)
nr
ID XP_012065746.1
description PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
swissprot
ID Q9SEZ6
description Ribonuclease H2 subunit A OS=Arabidopsis thaliana GN=At2g25100 PE=2 SV=2
trembl
ID A0A067L816
description Ribonuclease OS=Jatropha curcas GN=JCGZ_26483 PE=3 SV=1
Gene Ontology
ID GO:0003723
description ribonuclease h2 subunit a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53360: 48909-61959
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006693_030 0.0 - - PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
2 Hb_000956_010 0.0623993637 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
3 Hb_002368_050 0.0670417999 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004899_320 0.0678429487 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
5 Hb_011224_080 0.071672694 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
6 Hb_000029_030 0.0720779062 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
7 Hb_004662_030 0.0790274222 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
8 Hb_002097_110 0.0803158299 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_001427_120 0.0810952539 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
10 Hb_000376_050 0.0816789414 - - polyadenylate-binding protein, putative [Ricinus communis]
11 Hb_000205_270 0.0837284459 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
12 Hb_002603_100 0.084583319 - - ATATH9, putative [Ricinus communis]
13 Hb_007760_030 0.0854890264 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
14 Hb_002716_070 0.0866953513 - - PREDICTED: protein ABIL2 [Jatropha curcas]
15 Hb_000329_040 0.0873839098 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
16 Hb_005488_010 0.0885613392 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011794_070 0.0886092903 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
18 Hb_010638_020 0.0894258248 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
19 Hb_027472_180 0.0894386361 - - hypothetical protein L484_016229 [Morus notabilis]
20 Hb_001718_100 0.089844068 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]

Gene co-expression network

sample Hb_006693_030 Hb_006693_030 Hb_000956_010 Hb_000956_010 Hb_006693_030--Hb_000956_010 Hb_002368_050 Hb_002368_050 Hb_006693_030--Hb_002368_050 Hb_004899_320 Hb_004899_320 Hb_006693_030--Hb_004899_320 Hb_011224_080 Hb_011224_080 Hb_006693_030--Hb_011224_080 Hb_000029_030 Hb_000029_030 Hb_006693_030--Hb_000029_030 Hb_004662_030 Hb_004662_030 Hb_006693_030--Hb_004662_030 Hb_001427_120 Hb_001427_120 Hb_000956_010--Hb_001427_120 Hb_000376_050 Hb_000376_050 Hb_000956_010--Hb_000376_050 Hb_002603_100 Hb_002603_100 Hb_000956_010--Hb_002603_100 Hb_022250_040 Hb_022250_040 Hb_000956_010--Hb_022250_040 Hb_023386_080 Hb_023386_080 Hb_000956_010--Hb_023386_080 Hb_002368_050--Hb_000029_030 Hb_002368_050--Hb_000956_010 Hb_000025_200 Hb_000025_200 Hb_002368_050--Hb_000025_200 Hb_002368_050--Hb_011224_080 Hb_007908_020 Hb_007908_020 Hb_002368_050--Hb_007908_020 Hb_005488_010 Hb_005488_010 Hb_004899_320--Hb_005488_010 Hb_000836_070 Hb_000836_070 Hb_004899_320--Hb_000836_070 Hb_001366_200 Hb_001366_200 Hb_004899_320--Hb_001366_200 Hb_004899_320--Hb_000956_010 Hb_000329_040 Hb_000329_040 Hb_004899_320--Hb_000329_040 Hb_011224_080--Hb_000029_030 Hb_002659_140 Hb_002659_140 Hb_011224_080--Hb_002659_140 Hb_168918_020 Hb_168918_020 Hb_011224_080--Hb_168918_020 Hb_000556_080 Hb_000556_080 Hb_011224_080--Hb_000556_080 Hb_001776_110 Hb_001776_110 Hb_000029_030--Hb_001776_110 Hb_000975_290 Hb_000975_290 Hb_000029_030--Hb_000975_290 Hb_001454_210 Hb_001454_210 Hb_000029_030--Hb_001454_210 Hb_002097_110 Hb_002097_110 Hb_004662_030--Hb_002097_110 Hb_009711_030 Hb_009711_030 Hb_004662_030--Hb_009711_030 Hb_133271_020 Hb_133271_020 Hb_004662_030--Hb_133271_020 Hb_004662_030--Hb_000376_050 Hb_015001_020 Hb_015001_020 Hb_004662_030--Hb_015001_020 Hb_004662_030--Hb_022250_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.8665 5.81993 8.59518 9.4701 37.3721 44.3671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.786 45.4061 51.6538 12.8338 11.1312

CAGE analysis