Hb_000025_200

Information

Type -
Description -
Location Contig25: 172978-178518
Sequence    

Annotation

kegg
ID tcc:TCM_036766
description Cell division control 2 isoform 1
nr
ID XP_012065857.1
description PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
swissprot
ID P93101
description Cell division control protein 2 homolog OS=Oxybasis rubra GN=CDC2 PE=2 SV=1
trembl
ID A0A067LGA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22741 PE=4 SV=1
Gene Ontology
ID GO:0004672
description cell division control protein 2 homolog a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26068: 171783-178622
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_200 0.0 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
2 Hb_000001_020 0.064633489 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
3 Hb_007908_020 0.0661796126 - - zinc finger family protein [Populus trichocarpa]
4 Hb_001001_160 0.0741860815 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
5 Hb_002368_050 0.0781884615 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002027_130 0.0809086871 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
7 Hb_002973_080 0.0816119756 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
8 Hb_000017_120 0.0826774601 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
9 Hb_000029_030 0.0830254302 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
10 Hb_004223_130 0.0847479564 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001439_120 0.0869451705 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000771_110 0.0883484516 - - protein phosphatase 2C [Hevea brasiliensis]
13 Hb_003609_040 0.0910921044 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
14 Hb_000436_070 0.0918684309 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
15 Hb_010174_130 0.0921336939 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
16 Hb_001006_170 0.0925405065 - - Endonuclease V, putative [Ricinus communis]
17 Hb_000264_240 0.0927749374 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000556_080 0.0976045362 - - PREDICTED: synaptotagmin-5 [Pyrus x bretschneideri]
19 Hb_000418_180 0.0978391449 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001776_110 0.0979885697 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000025_200 Hb_000025_200 Hb_000001_020 Hb_000001_020 Hb_000025_200--Hb_000001_020 Hb_007908_020 Hb_007908_020 Hb_000025_200--Hb_007908_020 Hb_001001_160 Hb_001001_160 Hb_000025_200--Hb_001001_160 Hb_002368_050 Hb_002368_050 Hb_000025_200--Hb_002368_050 Hb_002027_130 Hb_002027_130 Hb_000025_200--Hb_002027_130 Hb_002973_080 Hb_002973_080 Hb_000025_200--Hb_002973_080 Hb_003609_040 Hb_003609_040 Hb_000001_020--Hb_003609_040 Hb_000001_020--Hb_007908_020 Hb_000017_120 Hb_000017_120 Hb_000001_020--Hb_000017_120 Hb_000107_390 Hb_000107_390 Hb_000001_020--Hb_000107_390 Hb_000761_020 Hb_000761_020 Hb_000001_020--Hb_000761_020 Hb_007908_020--Hb_002027_130 Hb_002477_160 Hb_002477_160 Hb_007908_020--Hb_002477_160 Hb_000120_950 Hb_000120_950 Hb_007908_020--Hb_000120_950 Hb_001584_330 Hb_001584_330 Hb_007908_020--Hb_001584_330 Hb_010174_130 Hb_010174_130 Hb_001001_160--Hb_010174_130 Hb_000733_060 Hb_000733_060 Hb_001001_160--Hb_000733_060 Hb_000771_110 Hb_000771_110 Hb_001001_160--Hb_000771_110 Hb_001001_160--Hb_000001_020 Hb_002377_040 Hb_002377_040 Hb_001001_160--Hb_002377_040 Hb_006693_030 Hb_006693_030 Hb_002368_050--Hb_006693_030 Hb_000029_030 Hb_000029_030 Hb_002368_050--Hb_000029_030 Hb_000956_010 Hb_000956_010 Hb_002368_050--Hb_000956_010 Hb_011224_080 Hb_011224_080 Hb_002368_050--Hb_011224_080 Hb_002368_050--Hb_007908_020 Hb_000436_070 Hb_000436_070 Hb_002027_130--Hb_000436_070 Hb_002027_130--Hb_000001_020 Hb_002027_130--Hb_003609_040 Hb_002027_130--Hb_000120_950 Hb_000352_110 Hb_000352_110 Hb_002973_080--Hb_000352_110 Hb_004970_200 Hb_004970_200 Hb_002973_080--Hb_004970_200 Hb_002973_080--Hb_000001_020 Hb_002973_080--Hb_000107_390 Hb_010638_020 Hb_010638_020 Hb_002973_080--Hb_010638_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
81.8115 16.1005 23.5102 22.0902 93.2615 68.9022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
87.5695 51.1997 83.3903 21.6698 12.1224

CAGE analysis