Hb_002377_040

Information

Type -
Description -
Location Contig2377: 80245-87335
Sequence    

Annotation

kegg
ID rcu:RCOM_1619090
description serine/threonine protein kinase, putative (EC:2.7.11.1)
nr
ID XP_002512018.1
description serine/threonine protein kinase, putative [Ricinus communis]
swissprot
ID O75716
description Serine/threonine-protein kinase 16 OS=Homo sapiens GN=STK16 PE=1 SV=4
trembl
ID B9RE79
description Serine/threonine protein kinase, putative OS=Ricinus communis GN=RCOM_1619090 PE=3 SV=1
Gene Ontology
ID GO:0005829
description serine threonine-protein kinase 16-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24971: 80241-87331 , PASA_asmbl_24972: 81509-81681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002377_040 0.0 - - serine/threonine protein kinase, putative [Ricinus communis]
2 Hb_000062_230 0.0529104255 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
3 Hb_005754_020 0.0597227058 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
4 Hb_002044_090 0.0656434412 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
5 Hb_003352_050 0.066874296 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
6 Hb_000028_470 0.0758763614 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
7 Hb_000085_340 0.0791214814 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
8 Hb_000172_120 0.0885283063 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
9 Hb_002631_050 0.0932248544 - - membrane associated ring finger 1,8, putative [Ricinus communis]
10 Hb_001493_100 0.0942716459 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
11 Hb_001001_160 0.0943616845 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
12 Hb_002681_140 0.0947982275 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
13 Hb_007786_010 0.0948302705 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
14 Hb_004813_010 0.095668439 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_127979_010 0.0960646645 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
16 Hb_000771_110 0.0970230173 - - protein phosphatase 2C [Hevea brasiliensis]
17 Hb_000176_140 0.0995364552 - - PREDICTED: bystin [Jatropha curcas]
18 Hb_000179_250 0.1008819234 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
19 Hb_000733_060 0.1014039128 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
20 Hb_000359_170 0.1023226802 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]

Gene co-expression network

sample Hb_002377_040 Hb_002377_040 Hb_000062_230 Hb_000062_230 Hb_002377_040--Hb_000062_230 Hb_005754_020 Hb_005754_020 Hb_002377_040--Hb_005754_020 Hb_002044_090 Hb_002044_090 Hb_002377_040--Hb_002044_090 Hb_003352_050 Hb_003352_050 Hb_002377_040--Hb_003352_050 Hb_000028_470 Hb_000028_470 Hb_002377_040--Hb_000028_470 Hb_000085_340 Hb_000085_340 Hb_002377_040--Hb_000085_340 Hb_000062_230--Hb_002044_090 Hb_000062_230--Hb_005754_020 Hb_004374_010 Hb_004374_010 Hb_000062_230--Hb_004374_010 Hb_000062_230--Hb_003352_050 Hb_004813_010 Hb_004813_010 Hb_000062_230--Hb_004813_010 Hb_005754_020--Hb_002044_090 Hb_005754_020--Hb_000028_470 Hb_005754_020--Hb_003352_050 Hb_000176_140 Hb_000176_140 Hb_005754_020--Hb_000176_140 Hb_002044_090--Hb_000176_140 Hb_000179_250 Hb_000179_250 Hb_002044_090--Hb_000179_250 Hb_002044_090--Hb_003352_050 Hb_000176_110 Hb_000176_110 Hb_003352_050--Hb_000176_110 Hb_000684_180 Hb_000684_180 Hb_003352_050--Hb_000684_180 Hb_178968_150 Hb_178968_150 Hb_000028_470--Hb_178968_150 Hb_001493_100 Hb_001493_100 Hb_000028_470--Hb_001493_100 Hb_001673_120 Hb_001673_120 Hb_000028_470--Hb_001673_120 Hb_000784_090 Hb_000784_090 Hb_000028_470--Hb_000784_090 Hb_002067_160 Hb_002067_160 Hb_000085_340--Hb_002067_160 Hb_000085_340--Hb_005754_020 Hb_002391_110 Hb_002391_110 Hb_000085_340--Hb_002391_110 Hb_026048_090 Hb_026048_090 Hb_000085_340--Hb_026048_090 Hb_000085_340--Hb_000176_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
198.131 20.0418 34.6167 22.1437 173.314 174.049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
122.927 74.7138 97.5034 23.7517 15.5041

CAGE analysis