Hb_000784_090

Information

Type -
Description -
Location Contig784: 143130-151687
Sequence    

Annotation

kegg
ID cit:102622044
description E3 ubiquitin-protein ligase RNF13-like
nr
ID XP_012075161.1
description PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
swissprot
ID Q8VZ14
description Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana GN=RMR2 PE=2 SV=1
trembl
ID A0A067KSU5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10986 PE=4 SV=1
Gene Ontology
ID GO:0008233
description receptor homology transmembrane domain- and ring domain-containing protein 2-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58047: 143129-149650 , PASA_asmbl_58048: 143129-149650 , PASA_asmbl_58049: 143129-149261 , PASA_asmbl_58050: 148500-149650 , PASA_asmbl_58051: 147229-148462
cDNA
(Sanger)
(ID:Location)		 005_L24.ab1: 146840-149650 , 024_E05.ab1: 148733-149650 , 026_P09.ab1: 146906-149650

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000784_090 0.0 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
2 Hb_033491_010 0.068078052 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
3 Hb_000481_010 0.0697893745 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
4 Hb_002215_050 0.0735755023 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
5 Hb_002249_140 0.0739436782 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
6 Hb_001493_100 0.0775680584 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
7 Hb_001369_060 0.0790625236 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
8 Hb_000282_060 0.081802523 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
9 Hb_000172_400 0.0822169901 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
10 Hb_000028_470 0.0827896257 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
11 Hb_003638_140 0.0840708258 - - protein binding protein, putative [Ricinus communis]
12 Hb_005754_020 0.0860790975 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
13 Hb_002044_090 0.0880709889 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
14 Hb_000771_110 0.0886197463 - - protein phosphatase 2C [Hevea brasiliensis]
15 Hb_008725_250 0.0891206901 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_168918_020 0.0894051185 - - pectin acetylesterase, putative [Ricinus communis]
17 Hb_012340_030 0.0894474774 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
18 Hb_001804_060 0.0899037965 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_18059 [Jatropha curcas]
19 Hb_000732_260 0.0900890697 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
20 Hb_001030_120 0.0931893537 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000784_090 Hb_000784_090 Hb_033491_010 Hb_033491_010 Hb_000784_090--Hb_033491_010 Hb_000481_010 Hb_000481_010 Hb_000784_090--Hb_000481_010 Hb_002215_050 Hb_002215_050 Hb_000784_090--Hb_002215_050 Hb_002249_140 Hb_002249_140 Hb_000784_090--Hb_002249_140 Hb_001493_100 Hb_001493_100 Hb_000784_090--Hb_001493_100 Hb_001369_060 Hb_001369_060 Hb_000784_090--Hb_001369_060 Hb_033491_010--Hb_001369_060 Hb_000732_260 Hb_000732_260 Hb_033491_010--Hb_000732_260 Hb_000272_100 Hb_000272_100 Hb_033491_010--Hb_000272_100 Hb_000282_060 Hb_000282_060 Hb_033491_010--Hb_000282_060 Hb_033491_010--Hb_002215_050 Hb_000340_510 Hb_000340_510 Hb_000481_010--Hb_000340_510 Hb_000481_010--Hb_002249_140 Hb_002026_110 Hb_002026_110 Hb_000481_010--Hb_002026_110 Hb_002818_040 Hb_002818_040 Hb_000481_010--Hb_002818_040 Hb_002631_050 Hb_002631_050 Hb_000481_010--Hb_002631_050 Hb_002215_050--Hb_001369_060 Hb_003638_140 Hb_003638_140 Hb_002215_050--Hb_003638_140 Hb_001214_130 Hb_001214_130 Hb_002215_050--Hb_001214_130 Hb_024714_030 Hb_024714_030 Hb_002215_050--Hb_024714_030 Hb_000771_110 Hb_000771_110 Hb_002249_140--Hb_000771_110 Hb_008725_250 Hb_008725_250 Hb_002249_140--Hb_008725_250 Hb_002249_140--Hb_000732_260 Hb_002044_090 Hb_002044_090 Hb_002249_140--Hb_002044_090 Hb_004813_010 Hb_004813_010 Hb_001493_100--Hb_004813_010 Hb_178968_150 Hb_178968_150 Hb_001493_100--Hb_178968_150 Hb_000028_470 Hb_000028_470 Hb_001493_100--Hb_000028_470 Hb_001269_150 Hb_001269_150 Hb_001493_100--Hb_001269_150 Hb_000714_020 Hb_000714_020 Hb_001493_100--Hb_000714_020 Hb_000365_360 Hb_000365_360 Hb_001369_060--Hb_000365_360 Hb_001804_060 Hb_001804_060 Hb_001369_060--Hb_001804_060 Hb_001369_060--Hb_003638_140 Hb_098709_010 Hb_098709_010 Hb_001369_060--Hb_098709_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
385.991 102.902 34.6686 45.9656 286.188 329.341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
269.64 215.848 243.864 55.7676 35.5613

CAGE analysis