Hb_000282_060

Information

Type -
Description -
Location Contig282: 125630-127767
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24610g
description POPTRDRAFT_653910; hypothetical protein
nr
ID XP_012077296.1
description PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KP92
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07676 PE=4 SV=1
Gene Ontology
ID GO:0005829
description cholinephosphotransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29517: 125655-127783
cDNA
(Sanger)
(ID:Location)		 008_P17.ab1: 127556-127783

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000282_060 0.0 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
2 Hb_000732_260 0.0624750963 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
3 Hb_033491_010 0.0658848527 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
4 Hb_006569_020 0.080180723 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
5 Hb_118977_020 0.0815118305 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
6 Hb_000784_090 0.081802523 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
7 Hb_001493_100 0.081879575 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
8 Hb_000272_100 0.0868998945 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
9 Hb_017434_090 0.0870679585 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000313_380 0.0880653728 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001269_150 0.0884932839 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
12 Hb_157854_010 0.090768301 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
13 Hb_003086_020 0.0912841454 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
14 Hb_001671_080 0.0913959933 - - amino acid binding protein, putative [Ricinus communis]
15 Hb_001437_040 0.0924929619 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
16 Hb_003226_150 0.0934564928 - - PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Jatropha curcas]
17 Hb_000676_220 0.0954223065 - - ADP-ribosylation factor, putative [Ricinus communis]
18 Hb_098709_010 0.0955675286 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
19 Hb_006824_020 0.0961990079 - - PREDICTED: thioredoxin domain-containing protein 9 homolog [Jatropha curcas]
20 Hb_159558_030 0.0969134018 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]

Gene co-expression network

sample Hb_000282_060 Hb_000282_060 Hb_000732_260 Hb_000732_260 Hb_000282_060--Hb_000732_260 Hb_033491_010 Hb_033491_010 Hb_000282_060--Hb_033491_010 Hb_006569_020 Hb_006569_020 Hb_000282_060--Hb_006569_020 Hb_118977_020 Hb_118977_020 Hb_000282_060--Hb_118977_020 Hb_000784_090 Hb_000784_090 Hb_000282_060--Hb_000784_090 Hb_001493_100 Hb_001493_100 Hb_000282_060--Hb_001493_100 Hb_000732_260--Hb_033491_010 Hb_002249_140 Hb_002249_140 Hb_000732_260--Hb_002249_140 Hb_000272_100 Hb_000272_100 Hb_000732_260--Hb_000272_100 Hb_001269_150 Hb_001269_150 Hb_000732_260--Hb_001269_150 Hb_001811_150 Hb_001811_150 Hb_000732_260--Hb_001811_150 Hb_001369_060 Hb_001369_060 Hb_033491_010--Hb_001369_060 Hb_033491_010--Hb_000272_100 Hb_033491_010--Hb_000784_090 Hb_002215_050 Hb_002215_050 Hb_033491_010--Hb_002215_050 Hb_000316_110 Hb_000316_110 Hb_006569_020--Hb_000316_110 Hb_022250_040 Hb_022250_040 Hb_006569_020--Hb_022250_040 Hb_001776_110 Hb_001776_110 Hb_006569_020--Hb_001776_110 Hb_001437_040 Hb_001437_040 Hb_006569_020--Hb_001437_040 Hb_159558_030 Hb_159558_030 Hb_006569_020--Hb_159558_030 Hb_004662_030 Hb_004662_030 Hb_006569_020--Hb_004662_030 Hb_003086_110 Hb_003086_110 Hb_118977_020--Hb_003086_110 Hb_007166_050 Hb_007166_050 Hb_118977_020--Hb_007166_050 Hb_001019_090 Hb_001019_090 Hb_118977_020--Hb_001019_090 Hb_000617_320 Hb_000617_320 Hb_118977_020--Hb_000617_320 Hb_118977_020--Hb_001437_040 Hb_157854_010 Hb_157854_010 Hb_118977_020--Hb_157854_010 Hb_000481_010 Hb_000481_010 Hb_000784_090--Hb_000481_010 Hb_000784_090--Hb_002215_050 Hb_000784_090--Hb_002249_140 Hb_000784_090--Hb_001493_100 Hb_000784_090--Hb_001369_060 Hb_004813_010 Hb_004813_010 Hb_001493_100--Hb_004813_010 Hb_178968_150 Hb_178968_150 Hb_001493_100--Hb_178968_150 Hb_000028_470 Hb_000028_470 Hb_001493_100--Hb_000028_470 Hb_001493_100--Hb_001269_150 Hb_000714_020 Hb_000714_020 Hb_001493_100--Hb_000714_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
200.495 46.6183 21.0699 26.103 142.434 171.587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
223.699 133.646 137.572 35.2009 10.5205

CAGE analysis