Hb_001369_060

Information

Type -
Description -
Location Contig1369: 46549-50136
Sequence    

Annotation

kegg
ID pop:POPTR_0004s24160g
description hypothetical protein
nr
ID XP_012090477.1
description PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
swissprot
ID Q3E875
description Uncharacterized Rho GTPase-activating protein At5g61530 OS=Arabidopsis thaliana GN=At5g61530 PE=1 SV=2
trembl
ID A0A067JSD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26285 PE=4 SV=1
Gene Ontology
ID GO:0005622
description uncharacterized rho gtpase-activating protein at5g61530

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10135: 45322-50021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_060 0.0 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
2 Hb_002215_050 0.0505890312 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
3 Hb_033491_010 0.054996334 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
4 Hb_000365_360 0.0665437037 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
5 Hb_001804_060 0.073303783 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_18059 [Jatropha curcas]
6 Hb_003638_140 0.0747214621 - - protein binding protein, putative [Ricinus communis]
7 Hb_098709_010 0.0773693935 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
8 Hb_001214_130 0.0784433544 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
9 Hb_000784_090 0.0790625236 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
10 Hb_027892_060 0.0823726127 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
11 Hb_006447_010 0.0826378102 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
12 Hb_000035_380 0.0884552749 - - -
13 Hb_000608_120 0.0885244606 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
14 Hb_002014_080 0.0904119718 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
15 Hb_030312_040 0.0910812009 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
16 Hb_024714_030 0.0911204539 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
17 Hb_007101_100 0.0929892397 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
18 Hb_002207_100 0.0931128197 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
19 Hb_000172_400 0.0940519213 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
20 Hb_000700_090 0.0944002179 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_001369_060 Hb_001369_060 Hb_002215_050 Hb_002215_050 Hb_001369_060--Hb_002215_050 Hb_033491_010 Hb_033491_010 Hb_001369_060--Hb_033491_010 Hb_000365_360 Hb_000365_360 Hb_001369_060--Hb_000365_360 Hb_001804_060 Hb_001804_060 Hb_001369_060--Hb_001804_060 Hb_003638_140 Hb_003638_140 Hb_001369_060--Hb_003638_140 Hb_098709_010 Hb_098709_010 Hb_001369_060--Hb_098709_010 Hb_002215_050--Hb_003638_140 Hb_002215_050--Hb_033491_010 Hb_000784_090 Hb_000784_090 Hb_002215_050--Hb_000784_090 Hb_001214_130 Hb_001214_130 Hb_002215_050--Hb_001214_130 Hb_024714_030 Hb_024714_030 Hb_002215_050--Hb_024714_030 Hb_000732_260 Hb_000732_260 Hb_033491_010--Hb_000732_260 Hb_000272_100 Hb_000272_100 Hb_033491_010--Hb_000272_100 Hb_000282_060 Hb_000282_060 Hb_033491_010--Hb_000282_060 Hb_033491_010--Hb_000784_090 Hb_000365_360--Hb_098709_010 Hb_000317_430 Hb_000317_430 Hb_000365_360--Hb_000317_430 Hb_002014_080 Hb_002014_080 Hb_000365_360--Hb_002014_080 Hb_000035_380 Hb_000035_380 Hb_000365_360--Hb_000035_380 Hb_118419_020 Hb_118419_020 Hb_000365_360--Hb_118419_020 Hb_162275_010 Hb_162275_010 Hb_001804_060--Hb_162275_010 Hb_001804_060--Hb_003638_140 Hb_001804_060--Hb_098709_010 Hb_001804_060--Hb_000784_090 Hb_001804_060--Hb_000365_360 Hb_003638_140--Hb_024714_030 Hb_011496_010 Hb_011496_010 Hb_003638_140--Hb_011496_010 Hb_000608_120 Hb_000608_120 Hb_003638_140--Hb_000608_120 Hb_001437_040 Hb_001437_040 Hb_098709_010--Hb_001437_040 Hb_002207_100 Hb_002207_100 Hb_098709_010--Hb_002207_100 Hb_098709_010--Hb_033491_010 Hb_000700_090 Hb_000700_090 Hb_098709_010--Hb_000700_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.4439 18.2692 7.15244 8.84821 55.3919 84.1924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.3492 41.4647 40.3598 11.7199 9.29636

CAGE analysis