Hb_001437_040

Information

Type -
Description -
Location Contig1437: 26197-31178
Sequence    

Annotation

kegg
ID vvi:100853682
description ATPase GET3-like
nr
ID XP_003632161.2
description PREDICTED: ATPase GET3-like [Vitis vinifera]
swissprot
ID O27555
description Putative arsenical pump-driving ATPase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_1511 PE=1 SV=1
trembl
ID B9STW8
description Arsenical pump-driving atpase, putative OS=Ricinus communis GN=RCOM_0545340 PE=4 SV=1
Gene Ontology
ID GO:0005739
description arsenical pump-driving

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11516: 26219-31159 , PASA_asmbl_11517: 29938-30802
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_040 0.0 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
2 Hb_006569_020 0.0716523474 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
3 Hb_098709_010 0.0724478129 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
4 Hb_007166_050 0.0754771454 - - -
5 Hb_118977_020 0.0757420887 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
6 Hb_003086_110 0.0769610503 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
7 Hb_003453_010 0.0807610172 - - conserved hypothetical protein [Ricinus communis]
8 Hb_017895_050 0.0815450565 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
9 Hb_008016_010 0.0818836502 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
10 Hb_027892_060 0.0821838075 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
11 Hb_001019_090 0.0824927299 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
12 Hb_000752_060 0.0838597347 - - expressed protein, putative [Ricinus communis]
13 Hb_000617_320 0.0893340932 - - 40S ribosomal protein S21B [Hevea brasiliensis]
14 Hb_000316_110 0.0899818207 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
15 Hb_000933_140 0.0909506859 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
16 Hb_000282_060 0.0924929619 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
17 Hb_008408_030 0.093976935 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
18 Hb_001047_010 0.0951330694 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002518_250 0.0961688829 - - conserved hypothetical protein 10 [Hevea brasiliensis]
20 Hb_000365_360 0.0964423983 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001437_040 Hb_001437_040 Hb_006569_020 Hb_006569_020 Hb_001437_040--Hb_006569_020 Hb_098709_010 Hb_098709_010 Hb_001437_040--Hb_098709_010 Hb_007166_050 Hb_007166_050 Hb_001437_040--Hb_007166_050 Hb_118977_020 Hb_118977_020 Hb_001437_040--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_001437_040--Hb_003086_110 Hb_003453_010 Hb_003453_010 Hb_001437_040--Hb_003453_010 Hb_000316_110 Hb_000316_110 Hb_006569_020--Hb_000316_110 Hb_022250_040 Hb_022250_040 Hb_006569_020--Hb_022250_040 Hb_001776_110 Hb_001776_110 Hb_006569_020--Hb_001776_110 Hb_159558_030 Hb_159558_030 Hb_006569_020--Hb_159558_030 Hb_004662_030 Hb_004662_030 Hb_006569_020--Hb_004662_030 Hb_000365_360 Hb_000365_360 Hb_098709_010--Hb_000365_360 Hb_001369_060 Hb_001369_060 Hb_098709_010--Hb_001369_060 Hb_002207_100 Hb_002207_100 Hb_098709_010--Hb_002207_100 Hb_033491_010 Hb_033491_010 Hb_098709_010--Hb_033491_010 Hb_000700_090 Hb_000700_090 Hb_098709_010--Hb_000700_090 Hb_007166_050--Hb_003086_110 Hb_000617_320 Hb_000617_320 Hb_007166_050--Hb_000617_320 Hb_001019_090 Hb_001019_090 Hb_007166_050--Hb_001019_090 Hb_007166_050--Hb_118977_020 Hb_007166_050--Hb_000316_110 Hb_118977_020--Hb_003086_110 Hb_118977_020--Hb_001019_090 Hb_118977_020--Hb_000617_320 Hb_157854_010 Hb_157854_010 Hb_118977_020--Hb_157854_010 Hb_003086_020 Hb_003086_020 Hb_003086_110--Hb_003086_020 Hb_000272_100 Hb_000272_100 Hb_003086_110--Hb_000272_100 Hb_003086_110--Hb_000617_320 Hb_017895_050 Hb_017895_050 Hb_003453_010--Hb_017895_050 Hb_002518_250 Hb_002518_250 Hb_003453_010--Hb_002518_250 Hb_027892_060 Hb_027892_060 Hb_003453_010--Hb_027892_060 Hb_000984_190 Hb_000984_190 Hb_003453_010--Hb_000984_190 Hb_003453_010--Hb_098709_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8982 1.99457 1.34209 2.63788 12.1813 19.7013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6597 15.1684 9.14327 2.93701 1.43122

CAGE analysis