Hb_002518_250

Information

Type -
Description -
Location Contig2518: 204152-205387
Sequence    

Annotation

kegg
ID rcu:RCOM_0731040
description hypothetical protein
nr
ID ADK13067.1
description conserved hypothetical protein 10 [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID D9IZZ8
description Putative uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26298: 204175-205635 , PASA_asmbl_26299: 204370-205580 , PASA_asmbl_26300: 204370-205602
cDNA
(Sanger)
(ID:Location)		 003_C19.ab1: 204313-205608 , 017_E02.ab1: 204313-205460 , 017_J15.ab1: 204295-205421 , 023_K12.ab1: 204281-205464 , 024_K14.ab1: 204337-205384 , 025_G13.ab1: 204331-205542 , 026_J19.ab1: 204336-205517 , 033_C05.ab1: 204301-205546 , 037_N09.ab1: 204272-205517 , 043_J23.ab1: 204326-205576 , 049_H04.ab1: 204316-205521

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_250 0.0 - - conserved hypothetical protein 10 [Hevea brasiliensis]
2 Hb_000175_520 0.081773591 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_003453_010 0.0914699807 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001437_040 0.0961688829 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
5 Hb_000933_140 0.0988602716 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
6 Hb_017895_050 0.0995519968 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
7 Hb_004852_020 0.1070806525 - - -
8 Hb_005941_010 0.1118826753 - - PREDICTED: protein SAND [Jatropha curcas]
9 Hb_005245_090 0.1148535244 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
10 Hb_025246_010 0.1160032083 - - -
11 Hb_008408_030 0.1172652319 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
12 Hb_000997_260 0.1187496084 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
13 Hb_008016_010 0.1188657582 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
14 Hb_002374_340 0.1188845508 - - Two-component response regulator ARR9, putative [Ricinus communis]
15 Hb_002942_030 0.1195378214 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
16 Hb_006569_020 0.1195633607 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
17 Hb_098709_010 0.1197316963 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
18 Hb_000193_230 0.1204431468 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
19 Hb_007317_220 0.1216824782 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
20 Hb_010578_090 0.1228388971 - - HEV2.1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_002518_250 Hb_002518_250 Hb_000175_520 Hb_000175_520 Hb_002518_250--Hb_000175_520 Hb_003453_010 Hb_003453_010 Hb_002518_250--Hb_003453_010 Hb_001437_040 Hb_001437_040 Hb_002518_250--Hb_001437_040 Hb_000933_140 Hb_000933_140 Hb_002518_250--Hb_000933_140 Hb_017895_050 Hb_017895_050 Hb_002518_250--Hb_017895_050 Hb_004852_020 Hb_004852_020 Hb_002518_250--Hb_004852_020 Hb_000175_520--Hb_004852_020 Hb_002942_030 Hb_002942_030 Hb_000175_520--Hb_002942_030 Hb_012395_100 Hb_012395_100 Hb_000175_520--Hb_012395_100 Hb_000175_520--Hb_000933_140 Hb_007317_220 Hb_007317_220 Hb_000175_520--Hb_007317_220 Hb_003453_010--Hb_017895_050 Hb_003453_010--Hb_001437_040 Hb_027892_060 Hb_027892_060 Hb_003453_010--Hb_027892_060 Hb_000984_190 Hb_000984_190 Hb_003453_010--Hb_000984_190 Hb_098709_010 Hb_098709_010 Hb_003453_010--Hb_098709_010 Hb_006569_020 Hb_006569_020 Hb_001437_040--Hb_006569_020 Hb_001437_040--Hb_098709_010 Hb_007166_050 Hb_007166_050 Hb_001437_040--Hb_007166_050 Hb_118977_020 Hb_118977_020 Hb_001437_040--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_001437_040--Hb_003086_110 Hb_008016_010 Hb_008016_010 Hb_000933_140--Hb_008016_010 Hb_026048_090 Hb_026048_090 Hb_000933_140--Hb_026048_090 Hb_000933_140--Hb_001437_040 Hb_007992_030 Hb_007992_030 Hb_000933_140--Hb_007992_030 Hb_000933_140--Hb_098709_010 Hb_017895_050--Hb_027892_060 Hb_017895_050--Hb_001437_040 Hb_004204_030 Hb_004204_030 Hb_017895_050--Hb_004204_030 Hb_017895_050--Hb_098709_010 Hb_003911_040 Hb_003911_040 Hb_017895_050--Hb_003911_040 Hb_004852_020--Hb_007317_220 Hb_004852_020--Hb_002942_030 Hb_023675_010 Hb_023675_010 Hb_004852_020--Hb_023675_010 Hb_001248_020 Hb_001248_020 Hb_004852_020--Hb_001248_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
368.199 17.0299 31.487 31.31 345.726 388.465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
577 290.381 203.31 45.6745 33.6495

CAGE analysis