Hb_007992_030

Information

Type transcription factor
Description TF Family: GNAT
Location Contig7992: 75841-76849
Sequence    

Annotation

kegg
ID pop:POPTR_0013s13760g
description hypothetical protein
nr
ID XP_012088301.1
description PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
swissprot
ID Q976C3
description Uncharacterized N-acetyltransferase STK_02580 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_02580 PE=3 SV=1
trembl
ID A0A067JJK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25803 PE=4 SV=1
Gene Ontology
ID GO:0008080
description n-alpha-acetyltransferase 30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58642: 76602-76782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007992_030 0.0 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
2 Hb_004502_030 0.0675165859 - - unknown [Populus trichocarpa]
3 Hb_000847_070 0.0676809544 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
4 Hb_000345_560 0.0699011207 - - -
5 Hb_001514_020 0.0737966625 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
6 Hb_001493_100 0.0832967807 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
7 Hb_004813_010 0.0837029831 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_001623_370 0.0854157809 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004204_030 0.0883650498 - - unknown [Populus trichocarpa]
10 Hb_027892_060 0.0893440206 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
11 Hb_004295_020 0.0923609048 - - thioredoxin II-type 1 [Hevea brasiliensis]
12 Hb_001754_150 0.0948176687 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
13 Hb_000933_140 0.0963689228 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
14 Hb_000752_060 0.0966268038 - - expressed protein, putative [Ricinus communis]
15 Hb_007632_250 0.0968032118 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003633_130 0.0979264213 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
17 Hb_001437_040 0.0982138273 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
18 Hb_003055_050 0.0989090057 - - hypothetical protein POPTR_0011s04510g [Populus trichocarpa]
19 Hb_004096_170 0.0998638794 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
20 Hb_001437_300 0.1017374403 - - -

Gene co-expression network

sample Hb_007992_030 Hb_007992_030 Hb_004502_030 Hb_004502_030 Hb_007992_030--Hb_004502_030 Hb_000847_070 Hb_000847_070 Hb_007992_030--Hb_000847_070 Hb_000345_560 Hb_000345_560 Hb_007992_030--Hb_000345_560 Hb_001514_020 Hb_001514_020 Hb_007992_030--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_007992_030--Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_007992_030--Hb_004813_010 Hb_004502_030--Hb_000847_070 Hb_004502_030--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004502_030--Hb_004096_170 Hb_004502_030--Hb_000345_560 Hb_003633_130 Hb_003633_130 Hb_004502_030--Hb_003633_130 Hb_000847_070--Hb_004096_170 Hb_000847_070--Hb_001514_020 Hb_134226_010 Hb_134226_010 Hb_000847_070--Hb_134226_010 Hb_006637_060 Hb_006637_060 Hb_000847_070--Hb_006637_060 Hb_000345_560--Hb_000847_070 Hb_002997_170 Hb_002997_170 Hb_000345_560--Hb_002997_170 Hb_003055_050 Hb_003055_050 Hb_000345_560--Hb_003055_050 Hb_168918_020 Hb_168918_020 Hb_000345_560--Hb_168918_020 Hb_003688_100 Hb_003688_100 Hb_001514_020--Hb_003688_100 Hb_143766_090 Hb_143766_090 Hb_001514_020--Hb_143766_090 Hb_001623_370 Hb_001623_370 Hb_001514_020--Hb_001623_370 Hb_001493_100--Hb_004813_010 Hb_178968_150 Hb_178968_150 Hb_001493_100--Hb_178968_150 Hb_000028_470 Hb_000028_470 Hb_001493_100--Hb_000028_470 Hb_001269_150 Hb_001269_150 Hb_001493_100--Hb_001269_150 Hb_000714_020 Hb_000714_020 Hb_001493_100--Hb_000714_020 Hb_000784_090 Hb_000784_090 Hb_001493_100--Hb_000784_090 Hb_004813_010--Hb_001514_020 Hb_004813_010--Hb_004096_170 Hb_002044_090 Hb_002044_090 Hb_004813_010--Hb_002044_090 Hb_004813_010--Hb_000847_070 Hb_000062_230 Hb_000062_230 Hb_004813_010--Hb_000062_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.8991 5.9042 4.51365 3.81428 35.7341 39.0759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.051 35.319 14.6469 4.09543 2.94782

CAGE analysis