Hb_004096_170

Information

Type -
Description -
Location Contig4096: 165963-169428
Sequence    

Annotation

kegg
ID cit:102617296
description uncharacterized LOC102617296
nr
ID XP_012077950.1
description PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
swissprot
ID Q552P9
description Uncharacterized protein DDB_G0275933 OS=Dictyostelium discoideum GN=DDB_G0275933 PE=3 SV=1
trembl
ID A0A061EPI3
description Cytochrome c oxidase biogenesis protein Cmc1-like OS=Theobroma cacao GN=TCM_019491 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40431: 165985-169526
cDNA
(Sanger)
(ID:Location)		 029_M05.ab1: 169017-169511 , 048_E21.ab1: 166053-169509

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004096_170 0.0 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
2 Hb_000847_070 0.0600887142 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
3 Hb_007441_340 0.0608208426 - - protein with unknown function [Ricinus communis]
4 Hb_003453_020 0.0616763085 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
5 Hb_000172_120 0.065247349 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
6 Hb_002044_090 0.0739844121 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
7 Hb_004813_010 0.078294301 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_004502_030 0.078643513 - - unknown [Populus trichocarpa]
9 Hb_001514_020 0.0800321129 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
10 Hb_005527_050 0.0816205216 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
11 Hb_000258_410 0.0824842264 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
12 Hb_150069_020 0.0833773499 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
13 Hb_000176_110 0.0839421941 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
14 Hb_002249_140 0.0843295004 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
15 Hb_008406_160 0.0865322336 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
16 Hb_003728_020 0.0870998405 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005288_160 0.0887129114 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
18 Hb_001514_200 0.0896153358 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
19 Hb_134226_010 0.0906016964 - - 40S ribosomal protein S21e, putative [Ricinus communis]
20 Hb_003352_050 0.0908120857 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]

Gene co-expression network

sample Hb_004096_170 Hb_004096_170 Hb_000847_070 Hb_000847_070 Hb_004096_170--Hb_000847_070 Hb_007441_340 Hb_007441_340 Hb_004096_170--Hb_007441_340 Hb_003453_020 Hb_003453_020 Hb_004096_170--Hb_003453_020 Hb_000172_120 Hb_000172_120 Hb_004096_170--Hb_000172_120 Hb_002044_090 Hb_002044_090 Hb_004096_170--Hb_002044_090 Hb_004813_010 Hb_004813_010 Hb_004096_170--Hb_004813_010 Hb_001514_020 Hb_001514_020 Hb_000847_070--Hb_001514_020 Hb_004502_030 Hb_004502_030 Hb_000847_070--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_000847_070--Hb_007992_030 Hb_134226_010 Hb_134226_010 Hb_000847_070--Hb_134226_010 Hb_006637_060 Hb_006637_060 Hb_000847_070--Hb_006637_060 Hb_007441_340--Hb_000172_120 Hb_007441_340--Hb_003453_020 Hb_002400_220 Hb_002400_220 Hb_007441_340--Hb_002400_220 Hb_001269_150 Hb_001269_150 Hb_007441_340--Hb_001269_150 Hb_000258_410 Hb_000258_410 Hb_007441_340--Hb_000258_410 Hb_000322_050 Hb_000322_050 Hb_003453_020--Hb_000322_050 Hb_000176_110 Hb_000176_110 Hb_003453_020--Hb_000176_110 Hb_005527_050 Hb_005527_050 Hb_003453_020--Hb_005527_050 Hb_000012_090 Hb_000012_090 Hb_003453_020--Hb_000012_090 Hb_012305_070 Hb_012305_070 Hb_003453_020--Hb_012305_070 Hb_000172_120--Hb_003453_020 Hb_000172_120--Hb_001269_150 Hb_000172_120--Hb_002400_220 Hb_002377_040 Hb_002377_040 Hb_000172_120--Hb_002377_040 Hb_000062_230 Hb_000062_230 Hb_002044_090--Hb_000062_230 Hb_005754_020 Hb_005754_020 Hb_002044_090--Hb_005754_020 Hb_002044_090--Hb_002377_040 Hb_000176_140 Hb_000176_140 Hb_002044_090--Hb_000176_140 Hb_000179_250 Hb_000179_250 Hb_002044_090--Hb_000179_250 Hb_003352_050 Hb_003352_050 Hb_002044_090--Hb_003352_050 Hb_001493_100 Hb_001493_100 Hb_004813_010--Hb_001493_100 Hb_004813_010--Hb_001514_020 Hb_004813_010--Hb_002044_090 Hb_004813_010--Hb_000847_070 Hb_004813_010--Hb_000062_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
138.571 29.4947 22.279 20.4125 172.188 136.252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
122.479 92.7692 57.206 33.8046 11.4011

CAGE analysis