Hb_006637_060

Information

Type -
Description -
Location Contig6637: 56034-60613
Sequence    

Annotation

kegg
ID rcu:RCOM_0903590
description hypothetical protein
nr
ID XP_012091301.1
description PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JAC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21177 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53126: 56059-60512 , PASA_asmbl_53127: 56043-60460 , PASA_asmbl_53128: 57565-60460 , PASA_asmbl_53129: 59259-59374 , PASA_asmbl_53130: 57639-60197
cDNA
(Sanger)
(ID:Location)		 016_K08.ab1: 57794-60197 , 051_G15.ab1: 56043-60168

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006637_060 0.0 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
2 Hb_000847_070 0.0773048237 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
3 Hb_003638_140 0.0836235687 - - protein binding protein, putative [Ricinus communis]
4 Hb_000176_110 0.0856253971 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
5 Hb_000003_090 0.0864102917 - - -
6 Hb_004502_030 0.0881007342 - - unknown [Populus trichocarpa]
7 Hb_002681_140 0.0886564881 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
8 Hb_001221_230 0.0905790794 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007632_250 0.0914057511 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002391_110 0.0924886789 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
11 Hb_003911_040 0.0927848374 - - PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas]
12 Hb_134226_010 0.0927995254 - - 40S ribosomal protein S21e, putative [Ricinus communis]
13 Hb_003352_050 0.0932226999 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
14 Hb_000284_200 0.0936325994 - - -
15 Hb_000365_360 0.0941071385 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
16 Hb_001623_370 0.0945438832 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004204_200 0.0977287842 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
18 Hb_001804_060 0.0979994583 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_18059 [Jatropha curcas]
19 Hb_004449_220 0.0984437441 transcription factor TF Family: C2H2 PREDICTED: uncharacterized zinc finger protein At4g06634 [Jatropha curcas]
20 Hb_001741_140 0.0986933013 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_006637_060 Hb_006637_060 Hb_000847_070 Hb_000847_070 Hb_006637_060--Hb_000847_070 Hb_003638_140 Hb_003638_140 Hb_006637_060--Hb_003638_140 Hb_000176_110 Hb_000176_110 Hb_006637_060--Hb_000176_110 Hb_000003_090 Hb_000003_090 Hb_006637_060--Hb_000003_090 Hb_004502_030 Hb_004502_030 Hb_006637_060--Hb_004502_030 Hb_002681_140 Hb_002681_140 Hb_006637_060--Hb_002681_140 Hb_004096_170 Hb_004096_170 Hb_000847_070--Hb_004096_170 Hb_001514_020 Hb_001514_020 Hb_000847_070--Hb_001514_020 Hb_000847_070--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_000847_070--Hb_007992_030 Hb_134226_010 Hb_134226_010 Hb_000847_070--Hb_134226_010 Hb_002215_050 Hb_002215_050 Hb_003638_140--Hb_002215_050 Hb_001369_060 Hb_001369_060 Hb_003638_140--Hb_001369_060 Hb_024714_030 Hb_024714_030 Hb_003638_140--Hb_024714_030 Hb_011496_010 Hb_011496_010 Hb_003638_140--Hb_011496_010 Hb_000608_120 Hb_000608_120 Hb_003638_140--Hb_000608_120 Hb_001804_060 Hb_001804_060 Hb_003638_140--Hb_001804_060 Hb_003352_050 Hb_003352_050 Hb_000176_110--Hb_003352_050 Hb_003453_020 Hb_003453_020 Hb_000176_110--Hb_003453_020 Hb_000012_090 Hb_000012_090 Hb_000176_110--Hb_000012_090 Hb_000176_110--Hb_000003_090 Hb_006922_080 Hb_006922_080 Hb_000176_110--Hb_006922_080 Hb_000077_050 Hb_000077_050 Hb_000176_110--Hb_000077_050 Hb_001741_140 Hb_001741_140 Hb_000003_090--Hb_001741_140 Hb_003544_090 Hb_003544_090 Hb_000003_090--Hb_003544_090 Hb_010128_130 Hb_010128_130 Hb_000003_090--Hb_010128_130 Hb_001221_230 Hb_001221_230 Hb_000003_090--Hb_001221_230 Hb_004502_030--Hb_007992_030 Hb_004502_030--Hb_001514_020 Hb_004502_030--Hb_004096_170 Hb_000345_560 Hb_000345_560 Hb_004502_030--Hb_000345_560 Hb_003633_130 Hb_003633_130 Hb_004502_030--Hb_003633_130 Hb_002391_110 Hb_002391_110 Hb_002681_140--Hb_002391_110 Hb_000176_140 Hb_000176_140 Hb_002681_140--Hb_000176_140 Hb_000284_200 Hb_000284_200 Hb_002681_140--Hb_000284_200 Hb_002044_090 Hb_002044_090 Hb_002681_140--Hb_002044_090 Hb_127979_010 Hb_127979_010 Hb_002681_140--Hb_127979_010 Hb_002681_140--Hb_011496_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
159.56 23.9656 15.9688 18.7341 111.488 173.546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
94.2684 91.2086 51.7223 35.4918 16.0229

CAGE analysis