Hb_002044_090

Information

Type -
Description -
Location Contig2044: 102605-109257
Sequence    

Annotation

kegg
ID rcu:RCOM_1211500
description hypothetical protein
nr
ID XP_012084082.1
description PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LKD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15035 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21005: 102462-109371 , PASA_asmbl_21006: 102485-109550
cDNA
(Sanger)
(ID:Location)		 053_C03.ab1: 102499-109295

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002044_090 0.0 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
2 Hb_000062_230 0.051554413 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
3 Hb_005754_020 0.0564904752 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
4 Hb_002377_040 0.0656434412 - - serine/threonine protein kinase, putative [Ricinus communis]
5 Hb_000176_140 0.0661520093 - - PREDICTED: bystin [Jatropha curcas]
6 Hb_000179_250 0.0696931895 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
7 Hb_003352_050 0.0706681626 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
8 Hb_002249_140 0.0713165686 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
9 Hb_004096_170 0.0739844121 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
10 Hb_002681_140 0.0785042843 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
11 Hb_004813_010 0.0802206846 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_001493_100 0.0838925209 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
13 Hb_004374_010 0.0841698115 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
14 Hb_000847_070 0.0845090875 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
15 Hb_001776_080 0.0856709204 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
16 Hb_005914_230 0.0860620851 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
17 Hb_000015_010 0.086836634 - - -
18 Hb_008725_250 0.0875447351 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_002377_050 0.087624909 - - Agmatine deiminase, putative [Ricinus communis]
20 Hb_000784_090 0.0880709889 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002044_090 Hb_002044_090 Hb_000062_230 Hb_000062_230 Hb_002044_090--Hb_000062_230 Hb_005754_020 Hb_005754_020 Hb_002044_090--Hb_005754_020 Hb_002377_040 Hb_002377_040 Hb_002044_090--Hb_002377_040 Hb_000176_140 Hb_000176_140 Hb_002044_090--Hb_000176_140 Hb_000179_250 Hb_000179_250 Hb_002044_090--Hb_000179_250 Hb_003352_050 Hb_003352_050 Hb_002044_090--Hb_003352_050 Hb_000062_230--Hb_002377_040 Hb_000062_230--Hb_005754_020 Hb_004374_010 Hb_004374_010 Hb_000062_230--Hb_004374_010 Hb_000062_230--Hb_003352_050 Hb_004813_010 Hb_004813_010 Hb_000062_230--Hb_004813_010 Hb_005754_020--Hb_002377_040 Hb_000028_470 Hb_000028_470 Hb_005754_020--Hb_000028_470 Hb_005754_020--Hb_003352_050 Hb_005754_020--Hb_000176_140 Hb_002377_040--Hb_003352_050 Hb_002377_040--Hb_000028_470 Hb_000085_340 Hb_000085_340 Hb_002377_040--Hb_000085_340 Hb_127979_010 Hb_127979_010 Hb_000176_140--Hb_127979_010 Hb_000176_140--Hb_000179_250 Hb_001776_080 Hb_001776_080 Hb_000176_140--Hb_001776_080 Hb_011316_030 Hb_011316_030 Hb_000176_140--Hb_011316_030 Hb_002681_140 Hb_002681_140 Hb_000176_140--Hb_002681_140 Hb_001433_170 Hb_001433_170 Hb_000179_250--Hb_001433_170 Hb_000179_250--Hb_011316_030 Hb_011609_190 Hb_011609_190 Hb_000179_250--Hb_011609_190 Hb_000179_250--Hb_001776_080 Hb_000176_110 Hb_000176_110 Hb_003352_050--Hb_000176_110 Hb_000684_180 Hb_000684_180 Hb_003352_050--Hb_000684_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
362.18 75.8399 48.2263 31.2786 348.85 322.609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
248.56 149.537 158.479 50.7347 23.5959

CAGE analysis