Hb_000062_230

Information

Type -
Description -
Location Contig62: 190171-200306
Sequence    

Annotation

kegg
ID rcu:RCOM_1081460
description oligopeptidase, putative (EC:3.4.24.16)
nr
ID XP_012085601.1
description PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
swissprot
ID F4HTQ1
description Probable thimet oligopeptidase OS=Arabidopsis thaliana GN=At1g67690 PE=3 SV=1
trembl
ID A0A067JSB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17905 PE=3 SV=1
Gene Ontology
ID GO:0004222
description probable thimet oligopeptidase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51426: 188459-198648 , PASA_asmbl_51427: 190295-199565 , PASA_asmbl_51428: 199103-199560 , PASA_asmbl_51429: 199601-200252
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_230 0.0 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
2 Hb_002044_090 0.051554413 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
3 Hb_002377_040 0.0529104255 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_005754_020 0.0568617617 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
5 Hb_004374_010 0.0771012548 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
6 Hb_003352_050 0.0798042799 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
7 Hb_004813_010 0.0833680111 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_001956_120 0.0853147476 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000179_250 0.0867673043 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
10 Hb_000085_340 0.0902147111 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
11 Hb_000176_140 0.0914713356 - - PREDICTED: bystin [Jatropha curcas]
12 Hb_000300_540 0.091890647 - - PREDICTED: syntaxin-132 [Jatropha curcas]
13 Hb_000714_020 0.0921928629 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
14 Hb_011609_190 0.0937238936 - - 14-3-3 protein 2 [Hevea brasiliensis]
15 Hb_001493_100 0.0937476719 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
16 Hb_000015_010 0.0943339696 - - -
17 Hb_001776_080 0.0951192817 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
18 Hb_000028_470 0.0953571318 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
19 Hb_000347_080 0.0969371818 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
20 Hb_004096_170 0.0974509469 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]

Gene co-expression network

sample Hb_000062_230 Hb_000062_230 Hb_002044_090 Hb_002044_090 Hb_000062_230--Hb_002044_090 Hb_002377_040 Hb_002377_040 Hb_000062_230--Hb_002377_040 Hb_005754_020 Hb_005754_020 Hb_000062_230--Hb_005754_020 Hb_004374_010 Hb_004374_010 Hb_000062_230--Hb_004374_010 Hb_003352_050 Hb_003352_050 Hb_000062_230--Hb_003352_050 Hb_004813_010 Hb_004813_010 Hb_000062_230--Hb_004813_010 Hb_002044_090--Hb_005754_020 Hb_002044_090--Hb_002377_040 Hb_000176_140 Hb_000176_140 Hb_002044_090--Hb_000176_140 Hb_000179_250 Hb_000179_250 Hb_002044_090--Hb_000179_250 Hb_002044_090--Hb_003352_050 Hb_002377_040--Hb_005754_020 Hb_002377_040--Hb_003352_050 Hb_000028_470 Hb_000028_470 Hb_002377_040--Hb_000028_470 Hb_000085_340 Hb_000085_340 Hb_002377_040--Hb_000085_340 Hb_005754_020--Hb_000028_470 Hb_005754_020--Hb_003352_050 Hb_005754_020--Hb_000176_140 Hb_001956_120 Hb_001956_120 Hb_004374_010--Hb_001956_120 Hb_000015_010 Hb_000015_010 Hb_004374_010--Hb_000015_010 Hb_017098_030 Hb_017098_030 Hb_004374_010--Hb_017098_030 Hb_004374_010--Hb_002044_090 Hb_011537_040 Hb_011537_040 Hb_004374_010--Hb_011537_040 Hb_000176_110 Hb_000176_110 Hb_003352_050--Hb_000176_110 Hb_000684_180 Hb_000684_180 Hb_003352_050--Hb_000684_180 Hb_001493_100 Hb_001493_100 Hb_004813_010--Hb_001493_100 Hb_001514_020 Hb_001514_020 Hb_004813_010--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004813_010--Hb_004096_170 Hb_004813_010--Hb_002044_090 Hb_000847_070 Hb_000847_070 Hb_004813_010--Hb_000847_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.2642 6.29303 6.60472 4.44067 44.3185 37.0095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.1873 17.1407 17.8176 4.85951 3.13181

CAGE analysis