Hb_001956_120

Information

Type -
Description -
Location Contig1956: 93271-96312
Sequence    

Annotation

kegg
ID rcu:RCOM_0300280
description hypothetical protein
nr
ID XP_002533747.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T678
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0300280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19584: 93190-96283 , PASA_asmbl_19585: 93190-96232
cDNA
(Sanger)
(ID:Location)		 033_I24.ab1: 93512-96232 , 038_D11.ab1: 93620-96283 , 052_F09.ab1: 93640-96283

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001956_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004374_010 0.0689371143 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
3 Hb_000347_080 0.0702532661 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
4 Hb_000976_270 0.0808107667 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
5 Hb_011537_040 0.085258716 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
6 Hb_000062_230 0.0853147476 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
7 Hb_001663_110 0.0867536796 - - RNA binding protein, putative [Ricinus communis]
8 Hb_009801_010 0.0906979797 - - ATPase inhibitor, putative [Ricinus communis]
9 Hb_000714_020 0.093307765 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
10 Hb_004447_030 0.0944561185 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
11 Hb_005741_020 0.094514447 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
12 Hb_164010_020 0.0982667173 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
13 Hb_011609_030 0.0987229529 - - conserved hypothetical protein 13 [Hevea brasiliensis]
14 Hb_005271_070 0.1001177218 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
15 Hb_002044_090 0.1014919539 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
16 Hb_004724_430 0.1029435469 - - PREDICTED: F-box protein At2g27310 [Jatropha curcas]
17 Hb_001623_370 0.1031941702 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000176_110 0.1060982668 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
19 Hb_003352_050 0.1079241535 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
20 Hb_000529_080 0.1082602363 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]

Gene co-expression network

sample Hb_001956_120 Hb_001956_120 Hb_004374_010 Hb_004374_010 Hb_001956_120--Hb_004374_010 Hb_000347_080 Hb_000347_080 Hb_001956_120--Hb_000347_080 Hb_000976_270 Hb_000976_270 Hb_001956_120--Hb_000976_270 Hb_011537_040 Hb_011537_040 Hb_001956_120--Hb_011537_040 Hb_000062_230 Hb_000062_230 Hb_001956_120--Hb_000062_230 Hb_001663_110 Hb_001663_110 Hb_001956_120--Hb_001663_110 Hb_000015_010 Hb_000015_010 Hb_004374_010--Hb_000015_010 Hb_004374_010--Hb_000062_230 Hb_017098_030 Hb_017098_030 Hb_004374_010--Hb_017098_030 Hb_002044_090 Hb_002044_090 Hb_004374_010--Hb_002044_090 Hb_004374_010--Hb_011537_040 Hb_012977_010 Hb_012977_010 Hb_000347_080--Hb_012977_010 Hb_000205_120 Hb_000205_120 Hb_000347_080--Hb_000205_120 Hb_004447_030 Hb_004447_030 Hb_000347_080--Hb_004447_030 Hb_000347_080--Hb_000976_270 Hb_004449_220 Hb_004449_220 Hb_000347_080--Hb_004449_220 Hb_000976_270--Hb_001663_110 Hb_000976_270--Hb_000205_120 Hb_000209_090 Hb_000209_090 Hb_000976_270--Hb_000209_090 Hb_000976_270--Hb_004447_030 Hb_004525_100 Hb_004525_100 Hb_000976_270--Hb_004525_100 Hb_005271_070 Hb_005271_070 Hb_011537_040--Hb_005271_070 Hb_000258_410 Hb_000258_410 Hb_011537_040--Hb_000258_410 Hb_000282_150 Hb_000282_150 Hb_011537_040--Hb_000282_150 Hb_002851_060 Hb_002851_060 Hb_011537_040--Hb_002851_060 Hb_000062_230--Hb_002044_090 Hb_002377_040 Hb_002377_040 Hb_000062_230--Hb_002377_040 Hb_005754_020 Hb_005754_020 Hb_000062_230--Hb_005754_020 Hb_003352_050 Hb_003352_050 Hb_000062_230--Hb_003352_050 Hb_004813_010 Hb_004813_010 Hb_000062_230--Hb_004813_010 Hb_001663_110--Hb_004447_030 Hb_001663_110--Hb_000205_120 Hb_000236_280 Hb_000236_280 Hb_001663_110--Hb_000236_280 Hb_012305_070 Hb_012305_070 Hb_001663_110--Hb_012305_070 Hb_005237_060 Hb_005237_060 Hb_001663_110--Hb_005237_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
162.912 24.3422 27.7324 17.5893 130.608 128.752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.2293 53.8535 26.2963 17.4713 8.93207

CAGE analysis