Hb_012977_010

Information

Type -
Description -
Location Contig12977: 14124-15161
Sequence    

Annotation

kegg
ID pop:POPTR_0008s01950g
description POPTRDRAFT_420143; hypothetical protein
nr
ID XP_011032893.1
description PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HKN1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s01950g PE=4 SV=2
Gene Ontology
ID GO:0009506
description core-2 i-branching beta- -n-acetylglucosaminyltransferase family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08859: 14163-19366
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012977_010 0.0 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
2 Hb_005725_070 0.0720712667 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000347_080 0.0810344332 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
4 Hb_001969_040 0.0810646139 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
5 Hb_007786_010 0.0835471367 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
6 Hb_000363_340 0.0878842946 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
7 Hb_000165_130 0.0909822799 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
8 Hb_005754_020 0.0979859402 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
9 Hb_001825_010 0.0981316571 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
10 Hb_001498_030 0.0983903967 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
11 Hb_000062_230 0.0999171649 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
12 Hb_002818_040 0.1020859841 - - tRNA synthetase-related family protein [Populus trichocarpa]
13 Hb_002025_140 0.1050194808 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
14 Hb_004324_280 0.1057528078 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
15 Hb_003216_110 0.1062763678 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
16 Hb_001268_210 0.1072179385 - - zinc finger protein, putative [Ricinus communis]
17 Hb_004724_430 0.1086401554 - - PREDICTED: F-box protein At2g27310 [Jatropha curcas]
18 Hb_000120_240 0.1107303538 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
19 Hb_001956_120 0.111263585 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009404_010 0.1123267701 - - PREDICTED: casein kinase II subunit alpha-2-like [Glycine max]

Gene co-expression network

sample Hb_012977_010 Hb_012977_010 Hb_005725_070 Hb_005725_070 Hb_012977_010--Hb_005725_070 Hb_000347_080 Hb_000347_080 Hb_012977_010--Hb_000347_080 Hb_001969_040 Hb_001969_040 Hb_012977_010--Hb_001969_040 Hb_007786_010 Hb_007786_010 Hb_012977_010--Hb_007786_010 Hb_000363_340 Hb_000363_340 Hb_012977_010--Hb_000363_340 Hb_000165_130 Hb_000165_130 Hb_012977_010--Hb_000165_130 Hb_001498_030 Hb_001498_030 Hb_005725_070--Hb_001498_030 Hb_002025_140 Hb_002025_140 Hb_005725_070--Hb_002025_140 Hb_002818_040 Hb_002818_040 Hb_005725_070--Hb_002818_040 Hb_005314_010 Hb_005314_010 Hb_005725_070--Hb_005314_010 Hb_024399_010 Hb_024399_010 Hb_005725_070--Hb_024399_010 Hb_001956_120 Hb_001956_120 Hb_000347_080--Hb_001956_120 Hb_000205_120 Hb_000205_120 Hb_000347_080--Hb_000205_120 Hb_004447_030 Hb_004447_030 Hb_000347_080--Hb_004447_030 Hb_000976_270 Hb_000976_270 Hb_000347_080--Hb_000976_270 Hb_004449_220 Hb_004449_220 Hb_000347_080--Hb_004449_220 Hb_000462_150 Hb_000462_150 Hb_001969_040--Hb_000462_150 Hb_000186_280 Hb_000186_280 Hb_001969_040--Hb_000186_280 Hb_003384_030 Hb_003384_030 Hb_001969_040--Hb_003384_030 Hb_018663_020 Hb_018663_020 Hb_001969_040--Hb_018663_020 Hb_004324_280 Hb_004324_280 Hb_001969_040--Hb_004324_280 Hb_001969_040--Hb_002818_040 Hb_007786_010--Hb_002818_040 Hb_000300_540 Hb_000300_540 Hb_007786_010--Hb_000300_540 Hb_009421_100 Hb_009421_100 Hb_007786_010--Hb_009421_100 Hb_006029_010 Hb_006029_010 Hb_007786_010--Hb_006029_010 Hb_007786_010--Hb_005725_070 Hb_000392_280 Hb_000392_280 Hb_000363_340--Hb_000392_280 Hb_001016_060 Hb_001016_060 Hb_000363_340--Hb_001016_060 Hb_000363_340--Hb_005725_070 Hb_000363_340--Hb_001498_030 Hb_000363_340--Hb_000300_540 Hb_000165_130--Hb_002025_140 Hb_000849_100 Hb_000849_100 Hb_000165_130--Hb_000849_100 Hb_000134_360 Hb_000134_360 Hb_000165_130--Hb_000134_360 Hb_000165_130--Hb_001969_040 Hb_002493_090 Hb_002493_090 Hb_000165_130--Hb_002493_090 Hb_000732_020 Hb_000732_020 Hb_000165_130--Hb_000732_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
172.26 33.2636 21.1433 33.1984 125.449 119.172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.0633 40.9492 51.6795 12.9973 12.8796

CAGE analysis