Hb_004449_220

Information

Type transcription factor
Description TF Family: C2H2
Location Contig4449: 145109-150021
Sequence    

Annotation

kegg
ID rcu:RCOM_1375410
description nucleic acid binding protein, putative
nr
ID XP_012066637.1
description PREDICTED: uncharacterized zinc finger protein At4g06634 [Jatropha curcas]
swissprot
ID Q2V3L3
description Uncharacterized zinc finger protein At4g06634 OS=Arabidopsis thaliana GN=At4g06634 PE=1 SV=1
trembl
ID A0A067L1W2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00209 PE=4 SV=1
Gene Ontology
ID GO:0003676
description uncharacterized zinc finger protein at4g06634

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42847: 145123-149829 , PASA_asmbl_42848: 145123-149701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_220 0.0 transcription factor TF Family: C2H2 PREDICTED: uncharacterized zinc finger protein At4g06634 [Jatropha curcas]
2 Hb_000120_240 0.0774734151 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
3 Hb_001969_040 0.0872417895 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
4 Hb_000347_080 0.0922102186 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
5 Hb_000186_280 0.0929091645 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
6 Hb_000205_120 0.0952388281 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
7 Hb_004678_060 0.095803365 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
8 Hb_000176_110 0.0962901746 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
9 Hb_003006_060 0.0965432992 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
10 Hb_009411_020 0.0966120324 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
11 Hb_000120_500 0.0969880117 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
12 Hb_000976_270 0.0978885275 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
13 Hb_006637_060 0.0984437441 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
14 Hb_005237_060 0.0991503329 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
15 Hb_001840_080 0.1000370757 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]
16 Hb_152079_010 0.1003408861 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
17 Hb_024714_020 0.1003500109 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_000462_150 0.1018435085 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
19 Hb_000373_270 0.1032397291 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
20 Hb_003352_050 0.1038148788 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]

Gene co-expression network

sample Hb_004449_220 Hb_004449_220 Hb_000120_240 Hb_000120_240 Hb_004449_220--Hb_000120_240 Hb_001969_040 Hb_001969_040 Hb_004449_220--Hb_001969_040 Hb_000347_080 Hb_000347_080 Hb_004449_220--Hb_000347_080 Hb_000186_280 Hb_000186_280 Hb_004449_220--Hb_000186_280 Hb_000205_120 Hb_000205_120 Hb_004449_220--Hb_000205_120 Hb_004678_060 Hb_004678_060 Hb_004449_220--Hb_004678_060 Hb_000956_130 Hb_000956_130 Hb_000120_240--Hb_000956_130 Hb_000625_020 Hb_000625_020 Hb_000120_240--Hb_000625_020 Hb_057183_040 Hb_057183_040 Hb_000120_240--Hb_057183_040 Hb_005662_030 Hb_005662_030 Hb_000120_240--Hb_005662_030 Hb_000028_470 Hb_000028_470 Hb_000120_240--Hb_000028_470 Hb_000462_150 Hb_000462_150 Hb_001969_040--Hb_000462_150 Hb_001969_040--Hb_000186_280 Hb_003384_030 Hb_003384_030 Hb_001969_040--Hb_003384_030 Hb_018663_020 Hb_018663_020 Hb_001969_040--Hb_018663_020 Hb_004324_280 Hb_004324_280 Hb_001969_040--Hb_004324_280 Hb_002818_040 Hb_002818_040 Hb_001969_040--Hb_002818_040 Hb_001956_120 Hb_001956_120 Hb_000347_080--Hb_001956_120 Hb_012977_010 Hb_012977_010 Hb_000347_080--Hb_012977_010 Hb_000347_080--Hb_000205_120 Hb_004447_030 Hb_004447_030 Hb_000347_080--Hb_004447_030 Hb_000976_270 Hb_000976_270 Hb_000347_080--Hb_000976_270 Hb_000684_420 Hb_000684_420 Hb_000186_280--Hb_000684_420 Hb_002400_180 Hb_002400_180 Hb_000186_280--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_000186_280--Hb_000076_080 Hb_000645_150 Hb_000645_150 Hb_000186_280--Hb_000645_150 Hb_012305_070 Hb_012305_070 Hb_000186_280--Hb_012305_070 Hb_000529_080 Hb_000529_080 Hb_000205_120--Hb_000529_080 Hb_000265_150 Hb_000265_150 Hb_000205_120--Hb_000265_150 Hb_000205_120--Hb_004447_030 Hb_008887_050 Hb_008887_050 Hb_000205_120--Hb_008887_050 Hb_000205_120--Hb_000976_270 Hb_010968_010 Hb_010968_010 Hb_000205_120--Hb_010968_010 Hb_004678_060--Hb_002400_180 Hb_003656_160 Hb_003656_160 Hb_004678_060--Hb_003656_160 Hb_009265_080 Hb_009265_080 Hb_004678_060--Hb_009265_080 Hb_008253_010 Hb_008253_010 Hb_004678_060--Hb_008253_010 Hb_002007_350 Hb_002007_350 Hb_004678_060--Hb_002007_350 Hb_003006_060 Hb_003006_060 Hb_004678_060--Hb_003006_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
119.896 17.7212 23.7633 18.2414 66.2265 102.256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.7567 40.5294 34.5355 21.5357 16.2152

CAGE analysis