Hb_000956_130

Information

Type -
Description -
Location Contig956: 163717-176066
Sequence    

Annotation

kegg
ID pop:POPTR_0002s12620g
description POPTRDRAFT_644105; hypothetical protein
nr
ID XP_002301174.1
description hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GNU7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s12620g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63559: 174341-175937 , PASA_asmbl_63560: 174515-175937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000956_130 0.0 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
2 Hb_028358_010 0.0428221838 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
3 Hb_116349_160 0.0915825169 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
4 Hb_004007_160 0.0969208836 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
5 Hb_000120_240 0.0979980337 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
6 Hb_000761_020 0.1014269297 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
7 Hb_029920_050 0.1028546348 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
8 Hb_033153_050 0.1030690089 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
9 Hb_000299_040 0.1075435269 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
10 Hb_007477_080 0.1075496812 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003641_050 0.10760768 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
12 Hb_004705_040 0.1086320969 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
13 Hb_005662_030 0.1108121373 - - protein with unknown function [Ricinus communis]
14 Hb_000481_040 0.1134371437 - - developmentally regulated GTP-binding protein, putative [Ricinus communis]
15 Hb_002188_130 0.1165218086 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]
16 Hb_000390_170 0.1167337114 - - PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
17 Hb_000028_610 0.1170026828 - - PREDICTED: uncharacterized protein LOC105644291 [Jatropha curcas]
18 Hb_002784_050 0.1172744371 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
19 Hb_033843_010 0.1177274173 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
20 Hb_000236_380 0.1178588655 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]

Gene co-expression network

sample Hb_000956_130 Hb_000956_130 Hb_028358_010 Hb_028358_010 Hb_000956_130--Hb_028358_010 Hb_116349_160 Hb_116349_160 Hb_000956_130--Hb_116349_160 Hb_004007_160 Hb_004007_160 Hb_000956_130--Hb_004007_160 Hb_000120_240 Hb_000120_240 Hb_000956_130--Hb_000120_240 Hb_000761_020 Hb_000761_020 Hb_000956_130--Hb_000761_020 Hb_029920_050 Hb_029920_050 Hb_000956_130--Hb_029920_050 Hb_028358_010--Hb_116349_160 Hb_028358_010--Hb_004007_160 Hb_028358_010--Hb_000761_020 Hb_028358_010--Hb_000120_240 Hb_000390_170 Hb_000390_170 Hb_028358_010--Hb_000390_170 Hb_116349_160--Hb_000761_020 Hb_004218_150 Hb_004218_150 Hb_116349_160--Hb_004218_150 Hb_116349_160--Hb_000120_240 Hb_007594_030 Hb_007594_030 Hb_116349_160--Hb_007594_030 Hb_004705_040 Hb_004705_040 Hb_004007_160--Hb_004705_040 Hb_000554_010 Hb_000554_010 Hb_004007_160--Hb_000554_010 Hb_000649_050 Hb_000649_050 Hb_004007_160--Hb_000649_050 Hb_000299_040 Hb_000299_040 Hb_004007_160--Hb_000299_040 Hb_004449_220 Hb_004449_220 Hb_000120_240--Hb_004449_220 Hb_000625_020 Hb_000625_020 Hb_000120_240--Hb_000625_020 Hb_057183_040 Hb_057183_040 Hb_000120_240--Hb_057183_040 Hb_005662_030 Hb_005662_030 Hb_000120_240--Hb_005662_030 Hb_000028_470 Hb_000028_470 Hb_000120_240--Hb_000028_470 Hb_000620_010 Hb_000620_010 Hb_000761_020--Hb_000620_010 Hb_000001_020 Hb_000001_020 Hb_000761_020--Hb_000001_020 Hb_000436_070 Hb_000436_070 Hb_000761_020--Hb_000436_070 Hb_000836_630 Hb_000836_630 Hb_000761_020--Hb_000836_630 Hb_007064_040 Hb_007064_040 Hb_000761_020--Hb_007064_040 Hb_001360_040 Hb_001360_040 Hb_000761_020--Hb_001360_040 Hb_001635_170 Hb_001635_170 Hb_029920_050--Hb_001635_170 Hb_033153_050 Hb_033153_050 Hb_029920_050--Hb_033153_050 Hb_008803_090 Hb_008803_090 Hb_029920_050--Hb_008803_090 Hb_007336_020 Hb_007336_020 Hb_029920_050--Hb_007336_020 Hb_000230_200 Hb_000230_200 Hb_029920_050--Hb_000230_200 Hb_033843_010 Hb_033843_010 Hb_029920_050--Hb_033843_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.0127 11.6837 23.0015 24.8738 36.4339 35.3471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.3372 19.465 28.0195 11.3213 12.4343

CAGE analysis