Hb_004007_160

Information

Type -
Description -
Location Contig4007: 143390-149601
Sequence    

Annotation

kegg
ID rcu:RCOM_0579620
description hypothetical protein
nr
ID XP_012079397.1
description PREDICTED: formin-like protein 6 [Jatropha curcas]
swissprot
ID Q9FJX6
description Formin-like protein 6 OS=Arabidopsis thaliana GN=FH6 PE=2 SV=1
trembl
ID A0A067K7G8
description Formin-like protein OS=Jatropha curcas GN=JCGZ_12528 PE=3 SV=1
Gene Ontology
ID GO:0005634
description formin-like protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39868: 144354-148051
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004007_160 0.0 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
2 Hb_004705_040 0.0825403421 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
3 Hb_000554_010 0.0830522864 - - transporter, putative [Ricinus communis]
4 Hb_000956_130 0.0969208836 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
5 Hb_000649_050 0.1109609706 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
6 Hb_028358_010 0.1153661718 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
7 Hb_000299_040 0.1255974356 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
8 Hb_001811_140 0.1277875722 - - hypothetical protein POPTR_0007s03140g [Populus trichocarpa]
9 Hb_007479_050 0.1312741162 - - PREDICTED: uncharacterized protein LOC105649412 [Jatropha curcas]
10 Hb_000072_070 0.1318340262 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl diphosphate synthase [Hevea brasiliensis]
11 Hb_002542_020 0.133070582 - - PREDICTED: uncharacterized protein LOC105634003 isoform X1 [Jatropha curcas]
12 Hb_003016_020 0.1384922717 - - PREDICTED: 4-coumarate--CoA ligase-like 6 isoform X1 [Jatropha curcas]
13 Hb_003641_050 0.1387998964 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
14 Hb_007477_080 0.1395406893 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002681_050 0.1419651911 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
16 Hb_000922_330 0.1433786377 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
17 Hb_005867_060 0.1434731383 - - PREDICTED: NADPH--cytochrome P450 reductase [Jatropha curcas]
18 Hb_001252_100 0.1435478473 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
19 Hb_011316_100 0.1448667378 - - PREDICTED: glycosyltransferase family 64 protein C4-like [Jatropha curcas]
20 Hb_000529_160 0.1450473127 - - PREDICTED: uncharacterized protein At1g04910 [Populus euphratica]

Gene co-expression network

sample Hb_004007_160 Hb_004007_160 Hb_004705_040 Hb_004705_040 Hb_004007_160--Hb_004705_040 Hb_000554_010 Hb_000554_010 Hb_004007_160--Hb_000554_010 Hb_000956_130 Hb_000956_130 Hb_004007_160--Hb_000956_130 Hb_000649_050 Hb_000649_050 Hb_004007_160--Hb_000649_050 Hb_028358_010 Hb_028358_010 Hb_004007_160--Hb_028358_010 Hb_000299_040 Hb_000299_040 Hb_004007_160--Hb_000299_040 Hb_004705_040--Hb_000554_010 Hb_004705_040--Hb_000299_040 Hb_004705_040--Hb_000956_130 Hb_004705_040--Hb_000649_050 Hb_007479_050 Hb_007479_050 Hb_004705_040--Hb_007479_050 Hb_004375_130 Hb_004375_130 Hb_000554_010--Hb_004375_130 Hb_000281_110 Hb_000281_110 Hb_000554_010--Hb_000281_110 Hb_000554_010--Hb_007479_050 Hb_000554_010--Hb_000649_050 Hb_000956_130--Hb_028358_010 Hb_116349_160 Hb_116349_160 Hb_000956_130--Hb_116349_160 Hb_000120_240 Hb_000120_240 Hb_000956_130--Hb_000120_240 Hb_000761_020 Hb_000761_020 Hb_000956_130--Hb_000761_020 Hb_029920_050 Hb_029920_050 Hb_000956_130--Hb_029920_050 Hb_003641_050 Hb_003641_050 Hb_000649_050--Hb_003641_050 Hb_000922_330 Hb_000922_330 Hb_000649_050--Hb_000922_330 Hb_002681_050 Hb_002681_050 Hb_000649_050--Hb_002681_050 Hb_001100_050 Hb_001100_050 Hb_000649_050--Hb_001100_050 Hb_003376_050 Hb_003376_050 Hb_000649_050--Hb_003376_050 Hb_007477_080 Hb_007477_080 Hb_000649_050--Hb_007477_080 Hb_028358_010--Hb_116349_160 Hb_028358_010--Hb_000761_020 Hb_028358_010--Hb_000120_240 Hb_000390_170 Hb_000390_170 Hb_028358_010--Hb_000390_170 Hb_001252_100 Hb_001252_100 Hb_000299_040--Hb_001252_100 Hb_000010_090 Hb_000010_090 Hb_000299_040--Hb_000010_090 Hb_000529_160 Hb_000529_160 Hb_000299_040--Hb_000529_160 Hb_000053_130 Hb_000053_130 Hb_000299_040--Hb_000053_130 Hb_033843_010 Hb_033843_010 Hb_000299_040--Hb_033843_010 Hb_000883_130 Hb_000883_130 Hb_000299_040--Hb_000883_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.2873 2.37646 7.28491 11.5267 9.197 11.3385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8427 7.58492 8.98506 2.84194 7.79346

CAGE analysis