Hb_000053_130

Information

Type -
Description -
Location Contig53: 203293-206219
Sequence    

Annotation

kegg
ID pmum:103341423
description uncharacterized protein At1g26090, chloroplastic
nr
ID XP_012082016.1
description PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]
swissprot
ID Q6DYE4
description Uncharacterized protein At1g26090, chloroplastic OS=Arabidopsis thaliana GN=At1g26090 PE=2 SV=1
trembl
ID A0A067KAR8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18276 PE=4 SV=1
Gene Ontology
ID GO:0005524
description p-loop containing nucleoside triphosphate hydrolases superfamily isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47299: 203463-204432 , PASA_asmbl_47301: 204645-204862 , PASA_asmbl_47302: 205290-205937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000053_130 0.0 - - PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]
2 Hb_150360_030 0.0694852829 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
3 Hb_000076_120 0.0717215176 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
4 Hb_000058_100 0.0789842517 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
5 Hb_054865_120 0.0790094569 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
6 Hb_000299_040 0.081106126 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
7 Hb_000094_300 0.0816132729 - - hypothetical protein POPTR_0002s26360g [Populus trichocarpa]
8 Hb_000010_090 0.0829190207 - - PREDICTED: afadin- and alpha-actinin-binding protein isoform X1 [Jatropha curcas]
9 Hb_004310_130 0.0834141014 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
10 Hb_001124_120 0.0834910717 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
11 Hb_008511_130 0.0851161444 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
12 Hb_001369_180 0.0863123526 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
13 Hb_003030_070 0.0880963994 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
14 Hb_012092_010 0.0886484901 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
15 Hb_000025_470 0.0887653082 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
16 Hb_004055_030 0.0897806998 - - casein kinase, putative [Ricinus communis]
17 Hb_002349_040 0.0905261335 - - PREDICTED: RNA pseudouridine synthase 5 [Jatropha curcas]
18 Hb_000212_330 0.0905734432 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000230_560 0.0921021911 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
20 Hb_000618_040 0.0921297528 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]

Gene co-expression network

sample Hb_000053_130 Hb_000053_130 Hb_150360_030 Hb_150360_030 Hb_000053_130--Hb_150360_030 Hb_000076_120 Hb_000076_120 Hb_000053_130--Hb_000076_120 Hb_000058_100 Hb_000058_100 Hb_000053_130--Hb_000058_100 Hb_054865_120 Hb_054865_120 Hb_000053_130--Hb_054865_120 Hb_000299_040 Hb_000299_040 Hb_000053_130--Hb_000299_040 Hb_000094_300 Hb_000094_300 Hb_000053_130--Hb_000094_300 Hb_004310_130 Hb_004310_130 Hb_150360_030--Hb_004310_130 Hb_007218_080 Hb_007218_080 Hb_150360_030--Hb_007218_080 Hb_001635_170 Hb_001635_170 Hb_150360_030--Hb_001635_170 Hb_001369_180 Hb_001369_180 Hb_150360_030--Hb_001369_180 Hb_150360_030--Hb_000076_120 Hb_000076_120--Hb_000058_100 Hb_000926_280 Hb_000926_280 Hb_000076_120--Hb_000926_280 Hb_000076_120--Hb_004310_130 Hb_000076_120--Hb_007218_080 Hb_001199_020 Hb_001199_020 Hb_000058_100--Hb_001199_020 Hb_003813_130 Hb_003813_130 Hb_000058_100--Hb_003813_130 Hb_027472_150 Hb_027472_150 Hb_000058_100--Hb_027472_150 Hb_004055_030 Hb_004055_030 Hb_000058_100--Hb_004055_030 Hb_000058_100--Hb_004310_130 Hb_000025_470 Hb_000025_470 Hb_054865_120--Hb_000025_470 Hb_002728_070 Hb_002728_070 Hb_054865_120--Hb_002728_070 Hb_003688_130 Hb_003688_130 Hb_054865_120--Hb_003688_130 Hb_028227_020 Hb_028227_020 Hb_054865_120--Hb_028227_020 Hb_008748_040 Hb_008748_040 Hb_054865_120--Hb_008748_040 Hb_001922_170 Hb_001922_170 Hb_054865_120--Hb_001922_170 Hb_001252_100 Hb_001252_100 Hb_000299_040--Hb_001252_100 Hb_000010_090 Hb_000010_090 Hb_000299_040--Hb_000010_090 Hb_000529_160 Hb_000529_160 Hb_000299_040--Hb_000529_160 Hb_033843_010 Hb_033843_010 Hb_000299_040--Hb_033843_010 Hb_000883_130 Hb_000883_130 Hb_000299_040--Hb_000883_130 Hb_000212_330 Hb_000212_330 Hb_000094_300--Hb_000212_330 Hb_008511_130 Hb_008511_130 Hb_000094_300--Hb_008511_130 Hb_009545_080 Hb_009545_080 Hb_000094_300--Hb_009545_080 Hb_000521_080 Hb_000521_080 Hb_000094_300--Hb_000521_080 Hb_000141_250 Hb_000141_250 Hb_000094_300--Hb_000141_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.65645 1.61356 4.52447 3.19145 6.06126 6.91765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.88112 3.91385 4.39433 2.88392 2.35499

CAGE analysis