Hb_054865_120

Information

Type -
Description -
Location Contig54865: 105710-110530
Sequence    

Annotation

kegg
ID pop:POPTR_0014s10000g
description POPTRDRAFT_824057; CBL-interacting protein kinase 9
nr
ID XP_012083118.1
description PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
swissprot
ID Q9MAM1
description CBL-interacting serine/threonine-protein kinase 9 OS=Arabidopsis thaliana GN=CIPK9 PE=1 SV=2
trembl
ID A0A067K053
description Non-specific serine/threonine protein kinase OS=Jatropha curcas GN=JCGZ_14199 PE=4 SV=1
Gene Ontology
ID GO:0004672
description cbl-interacting protein kinase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48090: 105730-110564 , PASA_asmbl_48091: 105886-110530 , PASA_asmbl_48092: 109173-110530
cDNA
(Sanger)
(ID:Location)		 028_E10.ab1: 105730-106916

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054865_120 0.0 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
2 Hb_000025_470 0.0619693722 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
3 Hb_002728_070 0.0646382857 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
4 Hb_003688_130 0.06912909 - - phosphoserine phosphatase, putative [Ricinus communis]
5 Hb_028227_020 0.0709878096 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
6 Hb_008748_040 0.0726083867 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
7 Hb_001922_170 0.0735702063 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
8 Hb_003125_160 0.0753475778 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
9 Hb_000212_330 0.0760122819 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_009545_080 0.0769218122 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
11 Hb_001579_270 0.0786342567 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
12 Hb_000053_130 0.0790094569 - - PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]
13 Hb_001157_020 0.0848843614 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
14 Hb_004310_130 0.0858579361 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
15 Hb_003030_070 0.0884629686 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
16 Hb_000230_560 0.088561953 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
17 Hb_004837_030 0.089039574 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
18 Hb_005847_060 0.0916504195 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
19 Hb_000058_100 0.0918078994 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
20 Hb_007632_030 0.0922586166 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_054865_120 Hb_054865_120 Hb_000025_470 Hb_000025_470 Hb_054865_120--Hb_000025_470 Hb_002728_070 Hb_002728_070 Hb_054865_120--Hb_002728_070 Hb_003688_130 Hb_003688_130 Hb_054865_120--Hb_003688_130 Hb_028227_020 Hb_028227_020 Hb_054865_120--Hb_028227_020 Hb_008748_040 Hb_008748_040 Hb_054865_120--Hb_008748_040 Hb_001922_170 Hb_001922_170 Hb_054865_120--Hb_001922_170 Hb_000025_470--Hb_002728_070 Hb_000025_470--Hb_008748_040 Hb_011671_040 Hb_011671_040 Hb_000025_470--Hb_011671_040 Hb_000058_100 Hb_000058_100 Hb_000025_470--Hb_000058_100 Hb_000025_470--Hb_003688_130 Hb_002728_070--Hb_000058_100 Hb_000329_140 Hb_000329_140 Hb_002728_070--Hb_000329_140 Hb_027472_150 Hb_027472_150 Hb_002728_070--Hb_027472_150 Hb_004310_130 Hb_004310_130 Hb_002728_070--Hb_004310_130 Hb_005288_190 Hb_005288_190 Hb_003688_130--Hb_005288_190 Hb_002495_040 Hb_002495_040 Hb_003688_130--Hb_002495_040 Hb_001579_270 Hb_001579_270 Hb_003688_130--Hb_001579_270 Hb_003688_130--Hb_008748_040 Hb_001157_020 Hb_001157_020 Hb_028227_020--Hb_001157_020 Hb_009694_010 Hb_009694_010 Hb_028227_020--Hb_009694_010 Hb_005697_060 Hb_005697_060 Hb_028227_020--Hb_005697_060 Hb_012725_050 Hb_012725_050 Hb_028227_020--Hb_012725_050 Hb_001936_080 Hb_001936_080 Hb_028227_020--Hb_001936_080 Hb_000120_790 Hb_000120_790 Hb_028227_020--Hb_000120_790 Hb_005357_080 Hb_005357_080 Hb_008748_040--Hb_005357_080 Hb_000212_330 Hb_000212_330 Hb_008748_040--Hb_000212_330 Hb_000054_090 Hb_000054_090 Hb_008748_040--Hb_000054_090 Hb_008748_040--Hb_011671_040 Hb_006570_140 Hb_006570_140 Hb_001922_170--Hb_006570_140 Hb_005847_060 Hb_005847_060 Hb_001922_170--Hb_005847_060 Hb_001922_170--Hb_001579_270 Hb_002820_050 Hb_002820_050 Hb_001922_170--Hb_002820_050 Hb_000094_330 Hb_000094_330 Hb_001922_170--Hb_000094_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.2956 8.49994 23.26 18.3827 28.1941 33.161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.5652 25.8791 16.0645 15.7999 20.0923

CAGE analysis