Hb_009694_010

Information

Type -
Description -
Location Contig9694: 12703-22469
Sequence    

Annotation

kegg
ID rcu:RCOM_1606460
description hypothetical protein
nr
ID XP_002525483.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FZ89
description UPF0426 protein At1g28150, chloroplastic OS=Arabidopsis thaliana GN=At1g28150 PE=2 SV=1
trembl
ID B9SHL4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1606460 PE=4 SV=1
Gene Ontology
ID GO:0010287
description upf0426 protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009694_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_028227_020 0.0566783257 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
3 Hb_000465_090 0.0651004854 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
4 Hb_004096_090 0.070814725 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
5 Hb_001157_020 0.0723478187 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
6 Hb_007632_030 0.0732405614 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
7 Hb_005697_060 0.0740750946 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
8 Hb_005054_060 0.0745550732 - - PREDICTED: syntaxin-81 [Jatropha curcas]
9 Hb_004116_060 0.0750293156 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
10 Hb_004837_030 0.0758971566 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
11 Hb_010222_020 0.0759152732 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
12 Hb_163950_030 0.0784454774 - - PREDICTED: uncharacterized protein LOC105648509 isoform X1 [Jatropha curcas]
13 Hb_000815_320 0.0784573321 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
14 Hb_001821_010 0.0787134878 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
15 Hb_001936_080 0.0795013217 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
16 Hb_000120_790 0.0802834214 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
17 Hb_001234_080 0.0813223288 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
18 Hb_002687_130 0.0836811794 - - PREDICTED: uncharacterized protein LOC105631153 isoform X1 [Jatropha curcas]
19 Hb_007163_070 0.0837324697 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
20 Hb_005731_050 0.08417886 - - hypothetical protein JCGZ_26820 [Jatropha curcas]

Gene co-expression network

sample Hb_009694_010 Hb_009694_010 Hb_028227_020 Hb_028227_020 Hb_009694_010--Hb_028227_020 Hb_000465_090 Hb_000465_090 Hb_009694_010--Hb_000465_090 Hb_004096_090 Hb_004096_090 Hb_009694_010--Hb_004096_090 Hb_001157_020 Hb_001157_020 Hb_009694_010--Hb_001157_020 Hb_007632_030 Hb_007632_030 Hb_009694_010--Hb_007632_030 Hb_005697_060 Hb_005697_060 Hb_009694_010--Hb_005697_060 Hb_028227_020--Hb_001157_020 Hb_028227_020--Hb_005697_060 Hb_012725_050 Hb_012725_050 Hb_028227_020--Hb_012725_050 Hb_001936_080 Hb_001936_080 Hb_028227_020--Hb_001936_080 Hb_000120_790 Hb_000120_790 Hb_028227_020--Hb_000120_790 Hb_001012_010 Hb_001012_010 Hb_000465_090--Hb_001012_010 Hb_000465_090--Hb_005697_060 Hb_002477_300 Hb_002477_300 Hb_000465_090--Hb_002477_300 Hb_007163_070 Hb_007163_070 Hb_000465_090--Hb_007163_070 Hb_146673_010 Hb_146673_010 Hb_000465_090--Hb_146673_010 Hb_001195_480 Hb_001195_480 Hb_004096_090--Hb_001195_480 Hb_004116_060 Hb_004116_060 Hb_004096_090--Hb_004116_060 Hb_005054_060 Hb_005054_060 Hb_004096_090--Hb_005054_060 Hb_000633_020 Hb_000633_020 Hb_004096_090--Hb_000633_020 Hb_010222_020 Hb_010222_020 Hb_004096_090--Hb_010222_020 Hb_001157_020--Hb_012725_050 Hb_001105_030 Hb_001105_030 Hb_001157_020--Hb_001105_030 Hb_001821_010 Hb_001821_010 Hb_001157_020--Hb_001821_010 Hb_001140_370 Hb_001140_370 Hb_001157_020--Hb_001140_370 Hb_000815_320 Hb_000815_320 Hb_001157_020--Hb_000815_320 Hb_000365_120 Hb_000365_120 Hb_007632_030--Hb_000365_120 Hb_009421_020 Hb_009421_020 Hb_007632_030--Hb_009421_020 Hb_156973_010 Hb_156973_010 Hb_007632_030--Hb_156973_010 Hb_004841_010 Hb_004841_010 Hb_007632_030--Hb_004841_010 Hb_007632_030--Hb_000120_790 Hb_023386_020 Hb_023386_020 Hb_007632_030--Hb_023386_020 Hb_005697_060--Hb_007163_070 Hb_006120_070 Hb_006120_070 Hb_005697_060--Hb_006120_070 Hb_001662_150 Hb_001662_150 Hb_005697_060--Hb_001662_150 Hb_001534_120 Hb_001534_120 Hb_005697_060--Hb_001534_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.3786 17.7512 44.3809 35.3235 47.8274 60.8617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.7308 74.4362 38.3241 23.3967 37.2009

CAGE analysis