Hb_001012_010

Information

Type -
Description -
Location Contig1012: 13907-19976
Sequence    

Annotation

kegg
ID rcu:RCOM_0482610
description nucleic acid binding protein, putative
nr
ID XP_012068066.1
description PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
swissprot
ID Q6GPH4
description XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 PE=1 SV=1
trembl
ID A0A067LBM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15921 PE=4 SV=1
Gene Ontology
ID GO:0005622
description xiap-associated factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00625: 13665-19740 , PASA_asmbl_00626: 14235-19712 , PASA_asmbl_00627: 15069-15271
cDNA
(Sanger)
(ID:Location)		 005_D16.ab1: 13983-19740 , 008_I09.ab1: 14502-19737 , 008_J01.ab1: 14426-19740 , 029_D13.ab1: 14080-19740 , 038_F06.ab1: 14309-19737

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001012_010 0.0 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
2 Hb_005588_030 0.0555618229 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
3 Hb_000465_090 0.058292447 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
4 Hb_002530_030 0.0727221057 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
5 Hb_009421_020 0.0744899235 - - PREDICTED: caltractin-like [Jatropha curcas]
6 Hb_009545_080 0.0749741884 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
7 Hb_000768_090 0.0762366565 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
8 Hb_004116_060 0.0767401971 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
9 Hb_002168_060 0.0769876624 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
10 Hb_001357_350 0.077184209 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005144_090 0.0775241841 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
12 Hb_000362_200 0.0790847493 - - exonuclease family protein [Populus trichocarpa]
13 Hb_000329_320 0.079664804 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
14 Hb_000649_230 0.0797944355 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
15 Hb_002013_020 0.0800114572 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
16 Hb_000883_020 0.0800220877 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
17 Hb_000039_220 0.0809616582 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
18 Hb_000575_040 0.0819182605 - - PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas]
19 Hb_005697_060 0.0823320515 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
20 Hb_002197_020 0.0831165659 - - DNA-directed RNA polymerase family protein [Theobroma cacao]

Gene co-expression network

sample Hb_001012_010 Hb_001012_010 Hb_005588_030 Hb_005588_030 Hb_001012_010--Hb_005588_030 Hb_000465_090 Hb_000465_090 Hb_001012_010--Hb_000465_090 Hb_002530_030 Hb_002530_030 Hb_001012_010--Hb_002530_030 Hb_009421_020 Hb_009421_020 Hb_001012_010--Hb_009421_020 Hb_009545_080 Hb_009545_080 Hb_001012_010--Hb_009545_080 Hb_000768_090 Hb_000768_090 Hb_001012_010--Hb_000768_090 Hb_004116_060 Hb_004116_060 Hb_005588_030--Hb_004116_060 Hb_004093_090 Hb_004093_090 Hb_005588_030--Hb_004093_090 Hb_000107_030 Hb_000107_030 Hb_005588_030--Hb_000107_030 Hb_073973_130 Hb_073973_130 Hb_005588_030--Hb_073973_130 Hb_120410_010 Hb_120410_010 Hb_005588_030--Hb_120410_010 Hb_009694_010 Hb_009694_010 Hb_000465_090--Hb_009694_010 Hb_005697_060 Hb_005697_060 Hb_000465_090--Hb_005697_060 Hb_002477_300 Hb_002477_300 Hb_000465_090--Hb_002477_300 Hb_007163_070 Hb_007163_070 Hb_000465_090--Hb_007163_070 Hb_146673_010 Hb_146673_010 Hb_000465_090--Hb_146673_010 Hb_000317_240 Hb_000317_240 Hb_002530_030--Hb_000317_240 Hb_002530_030--Hb_120410_010 Hb_001305_010 Hb_001305_010 Hb_002530_030--Hb_001305_010 Hb_000016_250 Hb_000016_250 Hb_002530_030--Hb_000016_250 Hb_004310_150 Hb_004310_150 Hb_002530_030--Hb_004310_150 Hb_011995_010 Hb_011995_010 Hb_002530_030--Hb_011995_010 Hb_000365_120 Hb_000365_120 Hb_009421_020--Hb_000365_120 Hb_000866_010 Hb_000866_010 Hb_009421_020--Hb_000866_010 Hb_007632_030 Hb_007632_030 Hb_009421_020--Hb_007632_030 Hb_001512_060 Hb_001512_060 Hb_009421_020--Hb_001512_060 Hb_000362_200 Hb_000362_200 Hb_009421_020--Hb_000362_200 Hb_000329_320 Hb_000329_320 Hb_009421_020--Hb_000329_320 Hb_000883_020 Hb_000883_020 Hb_009545_080--Hb_000883_020 Hb_002997_080 Hb_002997_080 Hb_009545_080--Hb_002997_080 Hb_000230_560 Hb_000230_560 Hb_009545_080--Hb_000230_560 Hb_004109_280 Hb_004109_280 Hb_009545_080--Hb_004109_280 Hb_000212_330 Hb_000212_330 Hb_009545_080--Hb_000212_330 Hb_032986_010 Hb_032986_010 Hb_009545_080--Hb_032986_010 Hb_000768_090--Hb_000317_240 Hb_000039_220 Hb_000039_220 Hb_000768_090--Hb_000039_220 Hb_000684_380 Hb_000684_380 Hb_000768_090--Hb_000684_380 Hb_000468_060 Hb_000468_060 Hb_000768_090--Hb_000468_060 Hb_005054_350 Hb_005054_350 Hb_000768_090--Hb_005054_350 Hb_000215_110 Hb_000215_110 Hb_000768_090--Hb_000215_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0838 4.66766 13.6202 6.29346 10.3416 10.4587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.28842 12.6202 9.6534 6.96782 6.22122

CAGE analysis