Hb_000107_030

Information

Type -
Description -
Location Contig107: 26101-29533
Sequence    

Annotation

kegg
ID rcu:RCOM_0342690
description hypothetical protein
nr
ID XP_002523392.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SBM3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0342690 PE=4 SV=1
Gene Ontology
ID GO:0005739
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02124: 25995-29539
cDNA
(Sanger)
(ID:Location)		 014_J19.ab1: 25995-28027

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005588_030 0.0678135 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
3 Hb_003579_050 0.0774789614 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
4 Hb_005144_090 0.085184908 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
5 Hb_000836_170 0.0854603762 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
6 Hb_001186_090 0.0877057405 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
7 Hb_073973_130 0.0930704903 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
8 Hb_000260_680 0.0947036592 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
9 Hb_000144_070 0.0961046392 - - conserved hypothetical protein [Ricinus communis]
10 Hb_058972_010 0.0982482454 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
11 Hb_004093_090 0.0983218151 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
12 Hb_011618_050 0.0987888169 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
13 Hb_004122_040 0.0988655828 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
14 Hb_001012_010 0.0999533613 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
15 Hb_002343_040 0.100370765 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000649_230 0.1012931028 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
17 Hb_010315_060 0.1022537213 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
18 Hb_002119_080 0.1026847127 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
19 Hb_000331_060 0.1031005837 - - PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Jatropha curcas]
20 Hb_000000_360 0.103403219 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]

Gene co-expression network

sample Hb_000107_030 Hb_000107_030 Hb_005588_030 Hb_005588_030 Hb_000107_030--Hb_005588_030 Hb_003579_050 Hb_003579_050 Hb_000107_030--Hb_003579_050 Hb_005144_090 Hb_005144_090 Hb_000107_030--Hb_005144_090 Hb_000836_170 Hb_000836_170 Hb_000107_030--Hb_000836_170 Hb_001186_090 Hb_001186_090 Hb_000107_030--Hb_001186_090 Hb_073973_130 Hb_073973_130 Hb_000107_030--Hb_073973_130 Hb_001012_010 Hb_001012_010 Hb_005588_030--Hb_001012_010 Hb_004116_060 Hb_004116_060 Hb_005588_030--Hb_004116_060 Hb_004093_090 Hb_004093_090 Hb_005588_030--Hb_004093_090 Hb_005588_030--Hb_073973_130 Hb_120410_010 Hb_120410_010 Hb_005588_030--Hb_120410_010 Hb_000260_680 Hb_000260_680 Hb_003579_050--Hb_000260_680 Hb_004128_200 Hb_004128_200 Hb_003579_050--Hb_004128_200 Hb_027073_030 Hb_027073_030 Hb_003579_050--Hb_027073_030 Hb_001776_060 Hb_001776_060 Hb_003579_050--Hb_001776_060 Hb_027472_120 Hb_027472_120 Hb_003579_050--Hb_027472_120 Hb_011618_050 Hb_011618_050 Hb_005144_090--Hb_011618_050 Hb_000049_140 Hb_000049_140 Hb_005144_090--Hb_000049_140 Hb_000417_130 Hb_000417_130 Hb_005144_090--Hb_000417_130 Hb_000297_160 Hb_000297_160 Hb_005144_090--Hb_000297_160 Hb_002013_020 Hb_002013_020 Hb_005144_090--Hb_002013_020 Hb_123915_040 Hb_123915_040 Hb_005144_090--Hb_123915_040 Hb_002338_020 Hb_002338_020 Hb_000836_170--Hb_002338_020 Hb_000836_170--Hb_005588_030 Hb_000576_050 Hb_000576_050 Hb_000836_170--Hb_000576_050 Hb_001329_130 Hb_001329_130 Hb_000836_170--Hb_001329_130 Hb_000649_070 Hb_000649_070 Hb_000836_170--Hb_000649_070 Hb_000260_100 Hb_000260_100 Hb_000836_170--Hb_000260_100 Hb_000331_110 Hb_000331_110 Hb_001186_090--Hb_000331_110 Hb_001186_090--Hb_000260_680 Hb_003943_050 Hb_003943_050 Hb_001186_090--Hb_003943_050 Hb_003159_140 Hb_003159_140 Hb_001186_090--Hb_003159_140 Hb_022132_050 Hb_022132_050 Hb_001186_090--Hb_022132_050 Hb_002119_080 Hb_002119_080 Hb_001186_090--Hb_002119_080 Hb_000107_190 Hb_000107_190 Hb_073973_130--Hb_000107_190 Hb_027428_010 Hb_027428_010 Hb_073973_130--Hb_027428_010 Hb_002872_030 Hb_002872_030 Hb_073973_130--Hb_002872_030 Hb_073973_130--Hb_022132_050 Hb_005337_090 Hb_005337_090 Hb_073973_130--Hb_005337_090 Hb_000610_010 Hb_000610_010 Hb_073973_130--Hb_000610_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.1444 13.2569 39.1558 13.2578 22.5573 17.2517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0145 31.5449 12.9475 17.2656 14.0466

CAGE analysis