Hb_004128_200

Information

Type -
Description -
Location Contig4128: 148126-152023
Sequence    

Annotation

kegg
ID cic:CICLE_v10012666mg
description hypothetical protein
nr
ID XP_012082233.1
description PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16431 PE=4 SV=1
Gene Ontology
ID GO:0097159
description ribosomal protein s24e family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40879: 148005-152092 , PASA_asmbl_40880: 148074-151998
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004128_200 0.0 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
2 Hb_003579_050 0.0720900208 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
3 Hb_011249_030 0.0832299917 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
4 Hb_027073_030 0.0844834508 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
5 Hb_001005_020 0.0957521528 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
6 Hb_001277_280 0.0958023104 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
7 Hb_039605_010 0.0980875369 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
8 Hb_000260_680 0.0989353401 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
9 Hb_000035_250 0.0994775609 - - PREDICTED: uncharacterized protein LOC105637544 [Jatropha curcas]
10 Hb_002928_010 0.1003118094 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
11 Hb_005389_100 0.1005461014 - - PREDICTED: methyltransferase-like protein 5 isoform X2 [Jatropha curcas]
12 Hb_058972_010 0.1023176244 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
13 Hb_001776_060 0.102824422 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
14 Hb_005975_010 0.1028866953 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]
15 Hb_000866_310 0.1033511605 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
16 Hb_006615_050 0.1043492769 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
17 Hb_001671_040 0.1043881292 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
18 Hb_000107_030 0.1056975254 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000959_220 0.1061600647 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000576_050 0.106303433 - - Kinase superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_004128_200 Hb_004128_200 Hb_003579_050 Hb_003579_050 Hb_004128_200--Hb_003579_050 Hb_011249_030 Hb_011249_030 Hb_004128_200--Hb_011249_030 Hb_027073_030 Hb_027073_030 Hb_004128_200--Hb_027073_030 Hb_001005_020 Hb_001005_020 Hb_004128_200--Hb_001005_020 Hb_001277_280 Hb_001277_280 Hb_004128_200--Hb_001277_280 Hb_039605_010 Hb_039605_010 Hb_004128_200--Hb_039605_010 Hb_000260_680 Hb_000260_680 Hb_003579_050--Hb_000260_680 Hb_003579_050--Hb_027073_030 Hb_001776_060 Hb_001776_060 Hb_003579_050--Hb_001776_060 Hb_000107_030 Hb_000107_030 Hb_003579_050--Hb_000107_030 Hb_027472_120 Hb_027472_120 Hb_003579_050--Hb_027472_120 Hb_000287_050 Hb_000287_050 Hb_011249_030--Hb_000287_050 Hb_011249_030--Hb_039605_010 Hb_011249_030--Hb_001277_280 Hb_029142_030 Hb_029142_030 Hb_011249_030--Hb_029142_030 Hb_065755_030 Hb_065755_030 Hb_011249_030--Hb_065755_030 Hb_002928_010 Hb_002928_010 Hb_027073_030--Hb_002928_010 Hb_000139_190 Hb_000139_190 Hb_027073_030--Hb_000139_190 Hb_027073_030--Hb_039605_010 Hb_000576_050 Hb_000576_050 Hb_027073_030--Hb_000576_050 Hb_000207_200 Hb_000207_200 Hb_001005_020--Hb_000207_200 Hb_000579_190 Hb_000579_190 Hb_001005_020--Hb_000579_190 Hb_002909_040 Hb_002909_040 Hb_001005_020--Hb_002909_040 Hb_000352_350 Hb_000352_350 Hb_001005_020--Hb_000352_350 Hb_009449_060 Hb_009449_060 Hb_001005_020--Hb_009449_060 Hb_007290_030 Hb_007290_030 Hb_001005_020--Hb_007290_030 Hb_006816_100 Hb_006816_100 Hb_001277_280--Hb_006816_100 Hb_000959_220 Hb_000959_220 Hb_001277_280--Hb_000959_220 Hb_001517_050 Hb_001517_050 Hb_001277_280--Hb_001517_050 Hb_001277_280--Hb_001005_020 Hb_039605_010--Hb_002928_010 Hb_000983_120 Hb_000983_120 Hb_039605_010--Hb_000983_120 Hb_039605_010--Hb_000287_050 Hb_003994_140 Hb_003994_140 Hb_039605_010--Hb_003994_140 Hb_000563_330 Hb_000563_330 Hb_039605_010--Hb_000563_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.0785 20.5663 51.1443 13.0634 23.6359 22.5309
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1131 22.9182 10.4681 12.3506 11.3828

CAGE analysis