Hb_003994_140

Information

Type -
Description -
Location Contig3994: 165567-167731
Sequence    

Annotation

kegg
ID rcu:RCOM_0089480
description hypothetical protein
nr
ID XP_002526722.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SL53
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0089480 PE=4 SV=1
Gene Ontology
ID GO:0005488
description ring fyve phd zinc finger superfamily isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39743: 166261-168163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002928_010 0.0643493583 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
3 Hb_039605_010 0.0722944188 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
4 Hb_000563_330 0.0730483588 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
5 Hb_000525_100 0.0764298281 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
6 Hb_000983_120 0.0779812453 - - cyclin-dependent protein kinase, putative [Ricinus communis]
7 Hb_002042_030 0.0814684245 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
8 Hb_000069_590 0.0843588808 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
9 Hb_000718_070 0.0844726833 - - conserved hypothetical protein [Ricinus communis]
10 Hb_058551_010 0.0858965832 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_000138_130 0.0877582657 - - hypothetical protein JCGZ_25540 [Jatropha curcas]
12 Hb_000735_050 0.0893502723 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
13 Hb_000453_040 0.0898554737 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
14 Hb_009270_040 0.0954882758 - - -
15 Hb_001077_030 0.0959552268 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
16 Hb_014361_150 0.0960509294 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
17 Hb_005288_080 0.096526055 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000760_020 0.0969184319 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
19 Hb_001301_220 0.097758161 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
20 Hb_000042_340 0.0997637811 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003994_140 Hb_003994_140 Hb_002928_010 Hb_002928_010 Hb_003994_140--Hb_002928_010 Hb_039605_010 Hb_039605_010 Hb_003994_140--Hb_039605_010 Hb_000563_330 Hb_000563_330 Hb_003994_140--Hb_000563_330 Hb_000525_100 Hb_000525_100 Hb_003994_140--Hb_000525_100 Hb_000983_120 Hb_000983_120 Hb_003994_140--Hb_000983_120 Hb_002042_030 Hb_002042_030 Hb_003994_140--Hb_002042_030 Hb_002928_010--Hb_039605_010 Hb_027073_030 Hb_027073_030 Hb_002928_010--Hb_027073_030 Hb_058972_010 Hb_058972_010 Hb_002928_010--Hb_058972_010 Hb_000414_050 Hb_000414_050 Hb_002928_010--Hb_000414_050 Hb_001418_040 Hb_001418_040 Hb_002928_010--Hb_001418_040 Hb_039605_010--Hb_000983_120 Hb_000287_050 Hb_000287_050 Hb_039605_010--Hb_000287_050 Hb_011249_030 Hb_011249_030 Hb_039605_010--Hb_011249_030 Hb_039605_010--Hb_000563_330 Hb_006452_160 Hb_006452_160 Hb_000563_330--Hb_006452_160 Hb_002739_130 Hb_002739_130 Hb_000563_330--Hb_002739_130 Hb_058551_010 Hb_058551_010 Hb_000563_330--Hb_058551_010 Hb_016734_090 Hb_016734_090 Hb_000563_330--Hb_016734_090 Hb_009270_040 Hb_009270_040 Hb_000525_100--Hb_009270_040 Hb_005288_080 Hb_005288_080 Hb_000525_100--Hb_005288_080 Hb_002615_120 Hb_002615_120 Hb_000525_100--Hb_002615_120 Hb_003096_060 Hb_003096_060 Hb_000525_100--Hb_003096_060 Hb_032202_080 Hb_032202_080 Hb_000525_100--Hb_032202_080 Hb_000679_340 Hb_000679_340 Hb_000525_100--Hb_000679_340 Hb_000042_340 Hb_000042_340 Hb_000983_120--Hb_000042_340 Hb_000983_120--Hb_002928_010 Hb_000983_120--Hb_000525_100 Hb_000983_120--Hb_027073_030 Hb_002042_030--Hb_000414_050 Hb_000915_080 Hb_000915_080 Hb_002042_030--Hb_000915_080 Hb_001301_220 Hb_001301_220 Hb_002042_030--Hb_001301_220 Hb_000718_070 Hb_000718_070 Hb_002042_030--Hb_000718_070 Hb_002042_030--Hb_001418_040 Hb_027472_120 Hb_027472_120 Hb_002042_030--Hb_027472_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.1878 6.86545 10.7233 5.14511 8.96554 7.74507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.2925 4.00936 2.65194 2.39889 2.53858

CAGE analysis