Hb_058551_010

Information

Type -
Description -
Location Contig58551: 9846-11759
Sequence    

Annotation

kegg
ID rcu:RCOM_1706760
description choline monooxygenase, putative (EC:1.14.15.7)
nr
ID XP_012074440.1
description PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q9SZR0
description Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2
trembl
ID A0A067KIJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10308 PE=4 SV=1
Gene Ontology
ID GO:0016491
description choline chloroplastic isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058551_010 0.0 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_000563_330 0.0787204926 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
3 Hb_003994_140 0.0858965832 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000173_150 0.092359123 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
5 Hb_000069_590 0.1010401709 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
6 Hb_039605_010 0.1097174711 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
7 Hb_000735_050 0.1097272227 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
8 Hb_002947_040 0.1098484968 - - PREDICTED: uncharacterized protein LOC105131897 isoform X1 [Populus euphratica]
9 Hb_002739_130 0.1111553666 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
10 Hb_003086_190 0.1119978514 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
11 Hb_006452_160 0.1163166706 - - structural constituent of ribosome, putative [Ricinus communis]
12 Hb_016734_090 0.1168235074 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
13 Hb_031711_010 0.1176889218 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
14 Hb_007951_100 0.1182695569 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_000186_330 0.1192072219 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
16 Hb_002928_010 0.1194585963 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
17 Hb_000983_120 0.1206043322 - - cyclin-dependent protein kinase, putative [Ricinus communis]
18 Hb_001269_200 0.1235039943 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
19 Hb_003125_070 0.1235559354 - - PREDICTED: serine/threonine-protein kinase rio1-like [Jatropha curcas]
20 Hb_000230_430 0.1259374801 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_058551_010 Hb_058551_010 Hb_000563_330 Hb_000563_330 Hb_058551_010--Hb_000563_330 Hb_003994_140 Hb_003994_140 Hb_058551_010--Hb_003994_140 Hb_000173_150 Hb_000173_150 Hb_058551_010--Hb_000173_150 Hb_000069_590 Hb_000069_590 Hb_058551_010--Hb_000069_590 Hb_039605_010 Hb_039605_010 Hb_058551_010--Hb_039605_010 Hb_000735_050 Hb_000735_050 Hb_058551_010--Hb_000735_050 Hb_006452_160 Hb_006452_160 Hb_000563_330--Hb_006452_160 Hb_002739_130 Hb_002739_130 Hb_000563_330--Hb_002739_130 Hb_000563_330--Hb_003994_140 Hb_000563_330--Hb_039605_010 Hb_016734_090 Hb_016734_090 Hb_000563_330--Hb_016734_090 Hb_002928_010 Hb_002928_010 Hb_003994_140--Hb_002928_010 Hb_003994_140--Hb_039605_010 Hb_000525_100 Hb_000525_100 Hb_003994_140--Hb_000525_100 Hb_000983_120 Hb_000983_120 Hb_003994_140--Hb_000983_120 Hb_002042_030 Hb_002042_030 Hb_003994_140--Hb_002042_030 Hb_000165_140 Hb_000165_140 Hb_000173_150--Hb_000165_140 Hb_000230_430 Hb_000230_430 Hb_000173_150--Hb_000230_430 Hb_000173_150--Hb_000069_590 Hb_000173_150--Hb_002739_130 Hb_000173_150--Hb_000735_050 Hb_000069_590--Hb_000735_050 Hb_000186_330 Hb_000186_330 Hb_000069_590--Hb_000186_330 Hb_000069_590--Hb_000230_430 Hb_000069_590--Hb_003994_140 Hb_000718_070 Hb_000718_070 Hb_000069_590--Hb_000718_070 Hb_000336_110 Hb_000336_110 Hb_000069_590--Hb_000336_110 Hb_039605_010--Hb_002928_010 Hb_039605_010--Hb_000983_120 Hb_000287_050 Hb_000287_050 Hb_039605_010--Hb_000287_050 Hb_011249_030 Hb_011249_030 Hb_039605_010--Hb_011249_030 Hb_000735_050--Hb_003994_140 Hb_000735_050--Hb_000718_070 Hb_000735_050--Hb_000186_330 Hb_000735_050--Hb_000336_110 Hb_001832_130 Hb_001832_130 Hb_000735_050--Hb_001832_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.529 13.0455 17.7009 5.51599 16.0667 12.5137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.45574 5.03173 3.68896 3.32668 2.23806

CAGE analysis