Hb_039605_010

Information

Type -
Description -
Location Contig39605: 1494-4248
Sequence    

Annotation

kegg
ID rcu:RCOM_1096430
description hypothetical protein
nr
ID XP_012091471.1
description PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
swissprot
ID Q9SSE9
description Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana GN=JMJ25 PE=1 SV=1
trembl
ID A0A067JLI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21341 PE=4 SV=1
Gene Ontology
ID GO:0008270
description lysine-specific demethylase jmj25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039605_010 0.0 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
2 Hb_002928_010 0.0546425686 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
3 Hb_000983_120 0.0581990807 - - cyclin-dependent protein kinase, putative [Ricinus communis]
4 Hb_000287_050 0.0646479734 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
5 Hb_003994_140 0.0722944188 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011249_030 0.074592849 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
7 Hb_000563_330 0.0772948648 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
8 Hb_000525_100 0.077380853 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
9 Hb_000139_190 0.0779254529 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
10 Hb_027073_030 0.0797083573 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
11 Hb_010362_030 0.0834653099 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
12 Hb_016734_090 0.0884952058 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
13 Hb_001269_200 0.0924725367 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
14 Hb_000042_340 0.0938150844 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
15 Hb_001405_190 0.0973190152 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
16 Hb_004631_190 0.0974967265 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
17 Hb_004128_200 0.0980875369 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
18 Hb_010998_040 0.0983222469 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
19 Hb_002739_130 0.0987780846 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
20 Hb_000138_130 0.0991872597 - - hypothetical protein JCGZ_25540 [Jatropha curcas]

Gene co-expression network

sample Hb_039605_010 Hb_039605_010 Hb_002928_010 Hb_002928_010 Hb_039605_010--Hb_002928_010 Hb_000983_120 Hb_000983_120 Hb_039605_010--Hb_000983_120 Hb_000287_050 Hb_000287_050 Hb_039605_010--Hb_000287_050 Hb_003994_140 Hb_003994_140 Hb_039605_010--Hb_003994_140 Hb_011249_030 Hb_011249_030 Hb_039605_010--Hb_011249_030 Hb_000563_330 Hb_000563_330 Hb_039605_010--Hb_000563_330 Hb_002928_010--Hb_003994_140 Hb_027073_030 Hb_027073_030 Hb_002928_010--Hb_027073_030 Hb_058972_010 Hb_058972_010 Hb_002928_010--Hb_058972_010 Hb_000414_050 Hb_000414_050 Hb_002928_010--Hb_000414_050 Hb_001418_040 Hb_001418_040 Hb_002928_010--Hb_001418_040 Hb_000042_340 Hb_000042_340 Hb_000983_120--Hb_000042_340 Hb_000983_120--Hb_003994_140 Hb_000983_120--Hb_002928_010 Hb_000525_100 Hb_000525_100 Hb_000983_120--Hb_000525_100 Hb_000983_120--Hb_027073_030 Hb_000287_050--Hb_011249_030 Hb_000139_190 Hb_000139_190 Hb_000287_050--Hb_000139_190 Hb_065755_030 Hb_065755_030 Hb_000287_050--Hb_065755_030 Hb_000287_050--Hb_002928_010 Hb_008921_010 Hb_008921_010 Hb_000287_050--Hb_008921_010 Hb_003994_140--Hb_000563_330 Hb_003994_140--Hb_000525_100 Hb_002042_030 Hb_002042_030 Hb_003994_140--Hb_002042_030 Hb_001277_280 Hb_001277_280 Hb_011249_030--Hb_001277_280 Hb_004128_200 Hb_004128_200 Hb_011249_030--Hb_004128_200 Hb_029142_030 Hb_029142_030 Hb_011249_030--Hb_029142_030 Hb_011249_030--Hb_065755_030 Hb_006452_160 Hb_006452_160 Hb_000563_330--Hb_006452_160 Hb_002739_130 Hb_002739_130 Hb_000563_330--Hb_002739_130 Hb_058551_010 Hb_058551_010 Hb_000563_330--Hb_058551_010 Hb_016734_090 Hb_016734_090 Hb_000563_330--Hb_016734_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1273 12.1491 22.039 8.30049 13.4003 12.5026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.96352 7.20268 5.74683 4.76347 5.90565

CAGE analysis