Hb_011249_030

Information

Type -
Description -
Location Contig11249: 39510-42809
Sequence    

Annotation

kegg
ID rcu:RCOM_0271970
description hypothetical protein
nr
ID XP_012081187.1
description PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KEJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17026 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03851: 39618-39879
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011249_030 0.0 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
2 Hb_000287_050 0.0564565556 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
3 Hb_039605_010 0.074592849 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
4 Hb_001277_280 0.078563539 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
5 Hb_004128_200 0.0832299917 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
6 Hb_029142_030 0.0873611279 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
7 Hb_065755_030 0.088610613 - - -
8 Hb_000983_120 0.0921888698 - - cyclin-dependent protein kinase, putative [Ricinus communis]
9 Hb_000959_220 0.0933220632 - - zinc finger protein, putative [Ricinus communis]
10 Hb_002232_190 0.0936724816 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001005_020 0.0964443335 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
12 Hb_002928_010 0.0969858568 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
13 Hb_003581_210 0.0971383474 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic [Jatropha curcas]
14 Hb_002255_040 0.0985064807 - - PREDICTED: biotin synthase [Jatropha curcas]
15 Hb_005975_010 0.0995998152 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]
16 Hb_000139_190 0.1012906038 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
17 Hb_003579_050 0.10357436 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
18 Hb_027073_030 0.1071031621 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
19 Hb_006816_100 0.1075921185 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
20 Hb_003994_140 0.1079045778 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011249_030 Hb_011249_030 Hb_000287_050 Hb_000287_050 Hb_011249_030--Hb_000287_050 Hb_039605_010 Hb_039605_010 Hb_011249_030--Hb_039605_010 Hb_001277_280 Hb_001277_280 Hb_011249_030--Hb_001277_280 Hb_004128_200 Hb_004128_200 Hb_011249_030--Hb_004128_200 Hb_029142_030 Hb_029142_030 Hb_011249_030--Hb_029142_030 Hb_065755_030 Hb_065755_030 Hb_011249_030--Hb_065755_030 Hb_000287_050--Hb_039605_010 Hb_000139_190 Hb_000139_190 Hb_000287_050--Hb_000139_190 Hb_000287_050--Hb_065755_030 Hb_002928_010 Hb_002928_010 Hb_000287_050--Hb_002928_010 Hb_008921_010 Hb_008921_010 Hb_000287_050--Hb_008921_010 Hb_039605_010--Hb_002928_010 Hb_000983_120 Hb_000983_120 Hb_039605_010--Hb_000983_120 Hb_003994_140 Hb_003994_140 Hb_039605_010--Hb_003994_140 Hb_000563_330 Hb_000563_330 Hb_039605_010--Hb_000563_330 Hb_006816_100 Hb_006816_100 Hb_001277_280--Hb_006816_100 Hb_001277_280--Hb_004128_200 Hb_000959_220 Hb_000959_220 Hb_001277_280--Hb_000959_220 Hb_001517_050 Hb_001517_050 Hb_001277_280--Hb_001517_050 Hb_001005_020 Hb_001005_020 Hb_001277_280--Hb_001005_020 Hb_003579_050 Hb_003579_050 Hb_004128_200--Hb_003579_050 Hb_027073_030 Hb_027073_030 Hb_004128_200--Hb_027073_030 Hb_004128_200--Hb_001005_020 Hb_004128_200--Hb_039605_010 Hb_005975_010 Hb_005975_010 Hb_029142_030--Hb_005975_010 Hb_000002_120 Hb_000002_120 Hb_029142_030--Hb_000002_120 Hb_002255_040 Hb_002255_040 Hb_029142_030--Hb_002255_040 Hb_000436_100 Hb_000436_100 Hb_029142_030--Hb_000436_100 Hb_000340_130 Hb_000340_130 Hb_029142_030--Hb_000340_130 Hb_178968_140 Hb_178968_140 Hb_065755_030--Hb_178968_140 Hb_001328_030 Hb_001328_030 Hb_065755_030--Hb_001328_030 Hb_003760_030 Hb_003760_030 Hb_065755_030--Hb_003760_030 Hb_005731_110 Hb_005731_110 Hb_065755_030--Hb_005731_110 Hb_065755_030--Hb_000959_220 Hb_001776_060 Hb_001776_060 Hb_065755_030--Hb_001776_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2768 12.9318 38.9415 11.9753 17.3415 14.1785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.96933 9.52964 7.91247 6.38266 8.80411

CAGE analysis