Hb_003760_030

Information

Type -
Description -
Location Contig3760: 70760-76041
Sequence    

Annotation

kegg
ID rcu:RCOM_1003490
description novel plant snare, putative
nr
ID XP_012084194.1
description PREDICTED: novel plant SNARE 13 [Jatropha curcas]
swissprot
ID Q9LRP1
description Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NPSN13 PE=1 SV=1
trembl
ID A0A067JYW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19083 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38367: 70953-71159 , PASA_asmbl_38368: 73330-74114
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003760_030 0.0 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
2 Hb_003119_090 0.0709197042 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
3 Hb_007007_040 0.0714037873 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
4 Hb_065755_030 0.0775451844 - - -
5 Hb_000751_030 0.0776983952 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
6 Hb_001501_080 0.0801604866 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
7 Hb_002485_030 0.081815255 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
8 Hb_000239_060 0.0836559448 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006816_100 0.0858303496 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
10 Hb_002284_210 0.0870094822 - - PREDICTED: protein canopy-1 [Jatropha curcas]
11 Hb_002054_050 0.0895846911 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
12 Hb_000058_130 0.0905604204 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
13 Hb_000352_350 0.0906715996 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
14 Hb_004312_010 0.0926189017 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
15 Hb_002874_180 0.0943922596 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
16 Hb_006615_050 0.095802022 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
17 Hb_000959_230 0.0962603518 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
18 Hb_000144_070 0.0976233288 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003506_030 0.0976710409 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_001002_060 0.0980193654 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]

Gene co-expression network

sample Hb_003760_030 Hb_003760_030 Hb_003119_090 Hb_003119_090 Hb_003760_030--Hb_003119_090 Hb_007007_040 Hb_007007_040 Hb_003760_030--Hb_007007_040 Hb_065755_030 Hb_065755_030 Hb_003760_030--Hb_065755_030 Hb_000751_030 Hb_000751_030 Hb_003760_030--Hb_000751_030 Hb_001501_080 Hb_001501_080 Hb_003760_030--Hb_001501_080 Hb_002485_030 Hb_002485_030 Hb_003760_030--Hb_002485_030 Hb_003119_090--Hb_007007_040 Hb_003943_050 Hb_003943_050 Hb_003119_090--Hb_003943_050 Hb_023313_040 Hb_023313_040 Hb_003119_090--Hb_023313_040 Hb_003119_090--Hb_001501_080 Hb_030982_030 Hb_030982_030 Hb_003119_090--Hb_030982_030 Hb_000019_190 Hb_000019_190 Hb_007007_040--Hb_000019_190 Hb_007007_040--Hb_000751_030 Hb_007007_040--Hb_023313_040 Hb_000006_010 Hb_000006_010 Hb_007007_040--Hb_000006_010 Hb_178968_140 Hb_178968_140 Hb_065755_030--Hb_178968_140 Hb_001328_030 Hb_001328_030 Hb_065755_030--Hb_001328_030 Hb_005731_110 Hb_005731_110 Hb_065755_030--Hb_005731_110 Hb_000959_220 Hb_000959_220 Hb_065755_030--Hb_000959_220 Hb_001776_060 Hb_001776_060 Hb_065755_030--Hb_001776_060 Hb_000751_030--Hb_001501_080 Hb_000392_230 Hb_000392_230 Hb_000751_030--Hb_000392_230 Hb_000776_100 Hb_000776_100 Hb_000751_030--Hb_000776_100 Hb_011618_050 Hb_011618_050 Hb_000751_030--Hb_011618_050 Hb_000414_050 Hb_000414_050 Hb_000751_030--Hb_000414_050 Hb_002054_050 Hb_002054_050 Hb_001501_080--Hb_002054_050 Hb_005463_130 Hb_005463_130 Hb_001501_080--Hb_005463_130 Hb_001501_080--Hb_000392_230 Hb_001501_080--Hb_007007_040 Hb_001085_260 Hb_001085_260 Hb_002485_030--Hb_001085_260 Hb_002485_030--Hb_003119_090 Hb_006816_100 Hb_006816_100 Hb_002485_030--Hb_006816_100 Hb_000103_120 Hb_000103_120 Hb_002485_030--Hb_000103_120 Hb_000494_080 Hb_000494_080 Hb_002485_030--Hb_000494_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0036 11.385 30.9125 22.02 14.0814 12.9355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.67296 13.3041 9.09913 7.77006 11.7184

CAGE analysis