Hb_000776_100

Information

Type -
Description -
Location Contig776: 124570-129712
Sequence    

Annotation

kegg
ID rcu:RCOM_1468950
description Cleavage stimulation factor 50 kDa subunit, putative
nr
ID XP_002514630.1
description Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
swissprot
ID Q8L4J2
description Cleavage stimulation factor subunit 50 OS=Arabidopsis thaliana GN=CSTF50 PE=1 SV=1
trembl
ID B9RLL1
description Cleavage stimulation factor 50 kDa subunit, putative OS=Ricinus communis GN=RCOM_1468950 PE=4 SV=1
Gene Ontology
ID GO:0005515
description cleavage stimulation factor subunit 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57798: 125019-125563 , PASA_asmbl_57799: 125796-127269 , PASA_asmbl_57800: 128208-129714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000776_100 0.0 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
2 Hb_000414_050 0.0582114663 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
3 Hb_003038_120 0.0586149506 - - rer1 protein, putative [Ricinus communis]
4 Hb_000138_130 0.0609769387 - - hypothetical protein JCGZ_25540 [Jatropha curcas]
5 Hb_006588_070 0.0620534661 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
6 Hb_000101_380 0.0633414266 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
7 Hb_002783_170 0.0679063685 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
8 Hb_000751_030 0.0728184054 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
9 Hb_002836_140 0.07740454 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
10 Hb_003096_060 0.078840907 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
11 Hb_005460_050 0.079621188 - - COR413-PM2, putative [Ricinus communis]
12 Hb_000737_030 0.0798609538 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
13 Hb_000260_680 0.0803103509 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
14 Hb_001418_040 0.0805604949 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
15 Hb_007441_020 0.0810021296 - - Rab6 [Hevea brasiliensis]
16 Hb_000933_010 0.0811828305 - - -
17 Hb_007951_040 0.0812822233 - - signal peptidase family protein [Populus trichocarpa]
18 Hb_000392_230 0.0814717691 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000007_280 0.0818531739 - - hypothetical protein VITISV_000066 [Vitis vinifera]
20 Hb_003897_040 0.0818557253 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000776_100 Hb_000776_100 Hb_000414_050 Hb_000414_050 Hb_000776_100--Hb_000414_050 Hb_003038_120 Hb_003038_120 Hb_000776_100--Hb_003038_120 Hb_000138_130 Hb_000138_130 Hb_000776_100--Hb_000138_130 Hb_006588_070 Hb_006588_070 Hb_000776_100--Hb_006588_070 Hb_000101_380 Hb_000101_380 Hb_000776_100--Hb_000101_380 Hb_002783_170 Hb_002783_170 Hb_000776_100--Hb_002783_170 Hb_000414_050--Hb_002783_170 Hb_002042_030 Hb_002042_030 Hb_000414_050--Hb_002042_030 Hb_000414_050--Hb_000138_130 Hb_002836_140 Hb_002836_140 Hb_000414_050--Hb_002836_140 Hb_000915_080 Hb_000915_080 Hb_000414_050--Hb_000915_080 Hb_003897_040 Hb_003897_040 Hb_003038_120--Hb_003897_040 Hb_032990_010 Hb_032990_010 Hb_003038_120--Hb_032990_010 Hb_003096_060 Hb_003096_060 Hb_003038_120--Hb_003096_060 Hb_005460_050 Hb_005460_050 Hb_003038_120--Hb_005460_050 Hb_003038_120--Hb_006588_070 Hb_000525_100 Hb_000525_100 Hb_000138_130--Hb_000525_100 Hb_002615_120 Hb_002615_120 Hb_000138_130--Hb_002615_120 Hb_002928_010 Hb_002928_010 Hb_000138_130--Hb_002928_010 Hb_000138_130--Hb_002042_030 Hb_002872_030 Hb_002872_030 Hb_006588_070--Hb_002872_030 Hb_027428_010 Hb_027428_010 Hb_006588_070--Hb_027428_010 Hb_022132_050 Hb_022132_050 Hb_006588_070--Hb_022132_050 Hb_001051_080 Hb_001051_080 Hb_006588_070--Hb_001051_080 Hb_000096_120 Hb_000096_120 Hb_006588_070--Hb_000096_120 Hb_000007_280 Hb_000007_280 Hb_000101_380--Hb_000007_280 Hb_000101_380--Hb_000915_080 Hb_001005_030 Hb_001005_030 Hb_000101_380--Hb_001005_030 Hb_017700_010 Hb_017700_010 Hb_000101_380--Hb_017700_010 Hb_000737_030 Hb_000737_030 Hb_000101_380--Hb_000737_030 Hb_002783_170--Hb_002836_140 Hb_002783_170--Hb_000915_080 Hb_007951_040 Hb_007951_040 Hb_002783_170--Hb_007951_040 Hb_002783_170--Hb_000101_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.66565 3.77719 6.95929 5.44905 5.54157 6.46306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.03119 4.21544 2.17375 3.749 2.77364

CAGE analysis