Hb_000096_120

Information

Type -
Description -
Location Contig96: 120352-122969
Sequence    

Annotation

kegg
ID tcc:TCM_000812
description hypothetical protein
nr
ID XP_012079588.1
description PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KAP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12549 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 194a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000096_120 0.0 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
2 Hb_000879_180 0.0655577175 - - XPA-binding protein, putative [Ricinus communis]
3 Hb_004096_180 0.0709521977 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
4 Hb_006588_070 0.0740412039 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
5 Hb_000331_090 0.0794151908 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
6 Hb_000207_150 0.0806149582 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
7 Hb_000046_570 0.0817497409 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
8 Hb_002872_030 0.081982571 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
9 Hb_005460_050 0.0832035975 - - COR413-PM2, putative [Ricinus communis]
10 Hb_000009_400 0.0841158054 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
11 Hb_003929_170 0.0849360284 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
12 Hb_000173_310 0.0862285081 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
13 Hb_007062_040 0.0879111166 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
14 Hb_000087_060 0.0879501556 - - protein transporter, putative [Ricinus communis]
15 Hb_000358_230 0.0884026573 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
16 Hb_000120_170 0.0888382162 - - selenoprotein [Populus trichocarpa]
17 Hb_000086_170 0.088935997 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
18 Hb_162060_010 0.0890678975 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002413_010 0.0904256618 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_000731_220 0.0907115593 - - PREDICTED: derlin-2.2 [Jatropha curcas]

Gene co-expression network

sample Hb_000096_120 Hb_000096_120 Hb_000879_180 Hb_000879_180 Hb_000096_120--Hb_000879_180 Hb_004096_180 Hb_004096_180 Hb_000096_120--Hb_004096_180 Hb_006588_070 Hb_006588_070 Hb_000096_120--Hb_006588_070 Hb_000331_090 Hb_000331_090 Hb_000096_120--Hb_000331_090 Hb_000207_150 Hb_000207_150 Hb_000096_120--Hb_000207_150 Hb_000046_570 Hb_000046_570 Hb_000096_120--Hb_000046_570 Hb_000567_190 Hb_000567_190 Hb_000879_180--Hb_000567_190 Hb_010407_050 Hb_010407_050 Hb_000879_180--Hb_010407_050 Hb_001377_310 Hb_001377_310 Hb_000879_180--Hb_001377_310 Hb_012506_030 Hb_012506_030 Hb_000879_180--Hb_012506_030 Hb_000879_180--Hb_004096_180 Hb_002872_030 Hb_002872_030 Hb_004096_180--Hb_002872_030 Hb_000087_060 Hb_000087_060 Hb_004096_180--Hb_000087_060 Hb_002028_210 Hb_002028_210 Hb_004096_180--Hb_002028_210 Hb_000359_040 Hb_000359_040 Hb_004096_180--Hb_000359_040 Hb_027428_010 Hb_027428_010 Hb_004096_180--Hb_027428_010 Hb_006588_070--Hb_002872_030 Hb_000776_100 Hb_000776_100 Hb_006588_070--Hb_000776_100 Hb_006588_070--Hb_027428_010 Hb_022132_050 Hb_022132_050 Hb_006588_070--Hb_022132_050 Hb_001051_080 Hb_001051_080 Hb_006588_070--Hb_001051_080 Hb_000331_090--Hb_000207_150 Hb_001959_110 Hb_001959_110 Hb_000331_090--Hb_001959_110 Hb_163175_010 Hb_163175_010 Hb_000331_090--Hb_163175_010 Hb_001405_210 Hb_001405_210 Hb_000331_090--Hb_001405_210 Hb_000720_040 Hb_000720_040 Hb_000331_090--Hb_000720_040 Hb_000107_230 Hb_000107_230 Hb_000331_090--Hb_000107_230 Hb_000207_150--Hb_000107_230 Hb_000058_130 Hb_000058_130 Hb_000207_150--Hb_000058_130 Hb_007831_010 Hb_007831_010 Hb_000207_150--Hb_007831_010 Hb_003929_170 Hb_003929_170 Hb_000207_150--Hb_003929_170 Hb_000579_120 Hb_000579_120 Hb_000207_150--Hb_000579_120 Hb_007062_040 Hb_007062_040 Hb_000046_570--Hb_007062_040 Hb_004586_060 Hb_004586_060 Hb_000046_570--Hb_004586_060 Hb_007248_030 Hb_007248_030 Hb_000046_570--Hb_007248_030 Hb_000390_250 Hb_000390_250 Hb_000046_570--Hb_000390_250 Hb_000046_570--Hb_001405_210 Hb_003912_040 Hb_003912_040 Hb_000046_570--Hb_003912_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05052 3.00801 3.9275 3.97963 2.44343 3.14139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3752 2.36523 1.89138 1.74625 1.60338

CAGE analysis