Hb_000058_130

Information

Type -
Description -
Location Contig58: 202280-217099
Sequence    

Annotation

kegg
ID pop:POPTR_0014s15900g
description POPTRDRAFT_573037; hypothetical protein
nr
ID XP_012080677.1
description PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KG73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13782 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49816: 209744-209988 , PASA_asmbl_49817: 211539-211767
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000058_130 0.0 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
2 Hb_000579_120 0.0506294554 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
3 Hb_000207_150 0.0619130721 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
4 Hb_002157_120 0.0683441146 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000028_520 0.0731205889 - - hypothetical protein L484_025125 [Morus notabilis]
6 Hb_001232_190 0.0735835871 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
7 Hb_002874_180 0.0738636216 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
8 Hb_004754_050 0.0744749696 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
9 Hb_027380_060 0.076814745 - - PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]
10 Hb_007831_010 0.0768512451 - - PREDICTED: oligoribonuclease [Vitis vinifera]
11 Hb_000061_180 0.0789303198 - - exonuclease, putative [Ricinus communis]
12 Hb_000976_120 0.0813133138 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
13 Hb_007007_040 0.0818207917 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
14 Hb_000110_310 0.0834620627 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
15 Hb_013575_010 0.0838093073 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
16 Hb_000270_680 0.0844821733 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
17 Hb_002572_020 0.0847775872 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
18 Hb_003929_170 0.0855652072 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
19 Hb_000136_110 0.0859688092 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
20 Hb_001087_030 0.0861656418 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]

Gene co-expression network

sample Hb_000058_130 Hb_000058_130 Hb_000579_120 Hb_000579_120 Hb_000058_130--Hb_000579_120 Hb_000207_150 Hb_000207_150 Hb_000058_130--Hb_000207_150 Hb_002157_120 Hb_002157_120 Hb_000058_130--Hb_002157_120 Hb_000028_520 Hb_000028_520 Hb_000058_130--Hb_000028_520 Hb_001232_190 Hb_001232_190 Hb_000058_130--Hb_001232_190 Hb_002874_180 Hb_002874_180 Hb_000058_130--Hb_002874_180 Hb_000579_120--Hb_001232_190 Hb_000110_310 Hb_000110_310 Hb_000579_120--Hb_000110_310 Hb_009898_050 Hb_009898_050 Hb_000579_120--Hb_009898_050 Hb_000976_120 Hb_000976_120 Hb_000579_120--Hb_000976_120 Hb_000579_120--Hb_000207_150 Hb_000107_230 Hb_000107_230 Hb_000207_150--Hb_000107_230 Hb_000331_090 Hb_000331_090 Hb_000207_150--Hb_000331_090 Hb_007831_010 Hb_007831_010 Hb_000207_150--Hb_007831_010 Hb_003929_170 Hb_003929_170 Hb_000207_150--Hb_003929_170 Hb_002157_120--Hb_000028_520 Hb_004754_050 Hb_004754_050 Hb_002157_120--Hb_004754_050 Hb_007975_060 Hb_007975_060 Hb_002157_120--Hb_007975_060 Hb_000061_180 Hb_000061_180 Hb_002157_120--Hb_000061_180 Hb_013575_010 Hb_013575_010 Hb_002157_120--Hb_013575_010 Hb_018790_020 Hb_018790_020 Hb_000028_520--Hb_018790_020 Hb_000028_520--Hb_000061_180 Hb_001025_120 Hb_001025_120 Hb_000028_520--Hb_001025_120 Hb_003119_060 Hb_003119_060 Hb_000028_520--Hb_003119_060 Hb_008616_050 Hb_008616_050 Hb_001232_190--Hb_008616_050 Hb_109000_020 Hb_109000_020 Hb_001232_190--Hb_109000_020 Hb_002641_060 Hb_002641_060 Hb_001232_190--Hb_002641_060 Hb_001232_190--Hb_000207_150 Hb_001022_030 Hb_001022_030 Hb_002874_180--Hb_001022_030 Hb_077026_010 Hb_077026_010 Hb_002874_180--Hb_077026_010 Hb_000003_170 Hb_000003_170 Hb_002874_180--Hb_000003_170 Hb_002874_180--Hb_000028_520 Hb_000003_780 Hb_000003_780 Hb_002874_180--Hb_000003_780
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6534 8.99031 22.5412 21.4358 13.7753 13.4491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9061 14.2417 10.6949 9.28254 15.1533

CAGE analysis