Hb_002157_120

Information

Type -
Description -
Location Contig2157: 89621-93703
Sequence    

Annotation

kegg
ID rcu:RCOM_1412330
description hypothetical protein
nr
ID XP_002528624.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRK5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1412330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22296: 92099-92417 , PASA_asmbl_22297: 89808-90309 , PASA_asmbl_22298: 89780-93989 , PASA_asmbl_22299: 91182-91333
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002157_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000028_520 0.0596268084 - - hypothetical protein L484_025125 [Morus notabilis]
3 Hb_004754_050 0.0637433619 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
4 Hb_007975_060 0.0647956987 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
5 Hb_000058_130 0.0683441146 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
6 Hb_000061_180 0.0705849511 - - exonuclease, putative [Ricinus communis]
7 Hb_013575_010 0.0708951724 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
8 Hb_006132_090 0.0728053101 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
9 Hb_000080_130 0.073134362 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
10 Hb_003119_060 0.0757703809 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
11 Hb_000069_640 0.0801317094 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
12 Hb_002572_020 0.0804542363 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
13 Hb_013405_020 0.0809427261 - - -
14 Hb_133702_010 0.0811903786 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_005167_010 0.0823603333 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
16 Hb_005016_040 0.0827372432 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
17 Hb_003878_090 0.0846194438 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
18 Hb_004545_110 0.0864321064 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
19 Hb_000666_100 0.0898034127 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
20 Hb_002304_150 0.090282693 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002157_120 Hb_002157_120 Hb_000028_520 Hb_000028_520 Hb_002157_120--Hb_000028_520 Hb_004754_050 Hb_004754_050 Hb_002157_120--Hb_004754_050 Hb_007975_060 Hb_007975_060 Hb_002157_120--Hb_007975_060 Hb_000058_130 Hb_000058_130 Hb_002157_120--Hb_000058_130 Hb_000061_180 Hb_000061_180 Hb_002157_120--Hb_000061_180 Hb_013575_010 Hb_013575_010 Hb_002157_120--Hb_013575_010 Hb_018790_020 Hb_018790_020 Hb_000028_520--Hb_018790_020 Hb_000028_520--Hb_000061_180 Hb_001025_120 Hb_001025_120 Hb_000028_520--Hb_001025_120 Hb_000028_520--Hb_000058_130 Hb_003119_060 Hb_003119_060 Hb_000028_520--Hb_003119_060 Hb_004754_050--Hb_007975_060 Hb_019181_040 Hb_019181_040 Hb_004754_050--Hb_019181_040 Hb_133702_010 Hb_133702_010 Hb_004754_050--Hb_133702_010 Hb_001087_030 Hb_001087_030 Hb_004754_050--Hb_001087_030 Hb_004754_050--Hb_000058_130 Hb_007975_060--Hb_000061_180 Hb_013405_020 Hb_013405_020 Hb_007975_060--Hb_013405_020 Hb_007975_060--Hb_133702_010 Hb_000023_260 Hb_000023_260 Hb_007975_060--Hb_000023_260 Hb_000579_120 Hb_000579_120 Hb_000058_130--Hb_000579_120 Hb_000207_150 Hb_000207_150 Hb_000058_130--Hb_000207_150 Hb_001232_190 Hb_001232_190 Hb_000058_130--Hb_001232_190 Hb_002874_180 Hb_002874_180 Hb_000058_130--Hb_002874_180 Hb_000375_390 Hb_000375_390 Hb_000061_180--Hb_000375_390 Hb_000061_180--Hb_000023_260 Hb_004452_120 Hb_004452_120 Hb_000061_180--Hb_004452_120 Hb_000061_180--Hb_133702_010 Hb_003057_060 Hb_003057_060 Hb_013575_010--Hb_003057_060 Hb_002641_060 Hb_002641_060 Hb_013575_010--Hb_002641_060 Hb_000260_350 Hb_000260_350 Hb_013575_010--Hb_000260_350 Hb_000375_350 Hb_000375_350 Hb_013575_010--Hb_000375_350 Hb_000666_100 Hb_000666_100 Hb_013575_010--Hb_000666_100 Hb_002681_100 Hb_002681_100 Hb_013575_010--Hb_002681_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3311 14.7947 36.6103 36.0433 15.3543 20.4444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4654 26.7631 22.153 14.073 26.8613

CAGE analysis