Hb_000375_350

Information

Type -
Description -
Location Contig375: 315497-319093
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07470g
description POPTRDRAFT_558514; hypothetical protein
nr
ID XP_012081607.1
description PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K3Y0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18648 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38271: 318420-318882
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000375_350 0.0 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
2 Hb_017895_040 0.0435725784 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
3 Hb_001300_150 0.0544260931 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
4 Hb_000599_250 0.0547463301 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
5 Hb_005496_140 0.0556729357 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002641_060 0.0591501232 - - prefoldin subunit, putative [Ricinus communis]
7 Hb_013575_010 0.0603398293 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
8 Hb_003582_060 0.0631664445 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
9 Hb_004162_130 0.0646755028 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000345_310 0.0652840828 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X3 [Jatropha curcas]
11 Hb_012258_010 0.0681810159 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
12 Hb_002235_250 0.0701782285 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
13 Hb_003728_060 0.0703922207 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
14 Hb_010931_130 0.0725821707 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
15 Hb_003878_090 0.0734538761 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
16 Hb_001711_020 0.0738288015 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
17 Hb_000976_120 0.0755096819 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
18 Hb_000260_350 0.0755784128 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000925_130 0.0759249056 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
20 Hb_004934_100 0.0764009846 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000375_350 Hb_000375_350 Hb_017895_040 Hb_017895_040 Hb_000375_350--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_000375_350--Hb_001300_150 Hb_000599_250 Hb_000599_250 Hb_000375_350--Hb_000599_250 Hb_005496_140 Hb_005496_140 Hb_000375_350--Hb_005496_140 Hb_002641_060 Hb_002641_060 Hb_000375_350--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_000375_350--Hb_013575_010 Hb_003582_060 Hb_003582_060 Hb_017895_040--Hb_003582_060 Hb_017895_040--Hb_005496_140 Hb_024439_010 Hb_024439_010 Hb_017895_040--Hb_024439_010 Hb_017895_040--Hb_013575_010 Hb_017895_040--Hb_002641_060 Hb_000465_160 Hb_000465_160 Hb_001300_150--Hb_000465_160 Hb_001300_150--Hb_000599_250 Hb_001300_150--Hb_003582_060 Hb_027380_130 Hb_027380_130 Hb_001300_150--Hb_027380_130 Hb_000260_030 Hb_000260_030 Hb_001300_150--Hb_000260_030 Hb_004934_100 Hb_004934_100 Hb_000599_250--Hb_004934_100 Hb_001711_020 Hb_001711_020 Hb_000599_250--Hb_001711_020 Hb_000599_250--Hb_005496_140 Hb_000599_250--Hb_002641_060 Hb_002863_050 Hb_002863_050 Hb_005496_140--Hb_002863_050 Hb_002235_250 Hb_002235_250 Hb_005496_140--Hb_002235_250 Hb_001252_130 Hb_001252_130 Hb_005496_140--Hb_001252_130 Hb_003416_010 Hb_003416_010 Hb_005496_140--Hb_003416_010 Hb_002641_060--Hb_013575_010 Hb_007878_010 Hb_007878_010 Hb_002641_060--Hb_007878_010 Hb_008616_050 Hb_008616_050 Hb_002641_060--Hb_008616_050 Hb_008847_030 Hb_008847_030 Hb_002641_060--Hb_008847_030 Hb_002641_060--Hb_003416_010 Hb_003057_060 Hb_003057_060 Hb_013575_010--Hb_003057_060 Hb_000260_350 Hb_000260_350 Hb_013575_010--Hb_000260_350 Hb_000666_100 Hb_000666_100 Hb_013575_010--Hb_000666_100 Hb_002681_100 Hb_002681_100 Hb_013575_010--Hb_002681_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.7094 25.071 45.1485 49.9356 28.8394 34.2338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.1322 52.1539 47.0648 23.8051 35.8263

CAGE analysis