Hb_004934_100

Information

Type -
Description -
Location Contig4934: 71313-74547
Sequence    

Annotation

kegg
ID rcu:RCOM_1601240
description hypothetical protein
nr
ID XP_002510688.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FFJ8
description L10-interacting MYB domain-containing protein OS=Arabidopsis thaliana GN=LIMYB PE=1 SV=1
trembl
ID B9R8P5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1601240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45385: 71210-71431 , PASA_asmbl_45386: 72741-75797
cDNA
(Sanger)
(ID:Location)		 016_I11.ab1: 73315-75775 , 045_N08.ab1: 73301-75775

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004934_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000599_250 0.035978497 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
3 Hb_008453_030 0.0447512339 - - Thioredoxin superfamily protein [Theobroma cacao]
4 Hb_001489_080 0.058984997 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_000421_220 0.0631461989 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
6 Hb_003697_040 0.0631636512 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
7 Hb_000985_030 0.0646785133 - - PREDICTED: RRP15-like protein [Populus euphratica]
8 Hb_000373_070 0.0647461971 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
9 Hb_004109_170 0.0649975309 - - PREDICTED: probable ribokinase [Jatropha curcas]
10 Hb_000003_230 0.0654996435 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
11 Hb_000477_060 0.0663225164 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
12 Hb_005496_140 0.0663751866 - - conserved hypothetical protein [Ricinus communis]
13 Hb_156279_020 0.0666010634 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
14 Hb_001711_020 0.0682026062 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
15 Hb_000081_160 0.0683541402 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
16 Hb_003605_090 0.0689903195 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
17 Hb_010361_010 0.0690941546 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
18 Hb_003582_060 0.0691191773 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
19 Hb_000260_030 0.0701416545 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
20 Hb_001300_150 0.0707808615 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_004934_100 Hb_004934_100 Hb_000599_250 Hb_000599_250 Hb_004934_100--Hb_000599_250 Hb_008453_030 Hb_008453_030 Hb_004934_100--Hb_008453_030 Hb_001489_080 Hb_001489_080 Hb_004934_100--Hb_001489_080 Hb_000421_220 Hb_000421_220 Hb_004934_100--Hb_000421_220 Hb_003697_040 Hb_003697_040 Hb_004934_100--Hb_003697_040 Hb_000985_030 Hb_000985_030 Hb_004934_100--Hb_000985_030 Hb_001711_020 Hb_001711_020 Hb_000599_250--Hb_001711_020 Hb_000375_350 Hb_000375_350 Hb_000599_250--Hb_000375_350 Hb_001300_150 Hb_001300_150 Hb_000599_250--Hb_001300_150 Hb_005496_140 Hb_005496_140 Hb_000599_250--Hb_005496_140 Hb_002641_060 Hb_002641_060 Hb_000599_250--Hb_002641_060 Hb_008453_030--Hb_000421_220 Hb_000107_160 Hb_000107_160 Hb_008453_030--Hb_000107_160 Hb_000061_210 Hb_000061_210 Hb_008453_030--Hb_000061_210 Hb_000373_070 Hb_000373_070 Hb_008453_030--Hb_000373_070 Hb_000081_160 Hb_000081_160 Hb_008453_030--Hb_000081_160 Hb_001489_080--Hb_000985_030 Hb_000783_020 Hb_000783_020 Hb_001489_080--Hb_000783_020 Hb_001489_080--Hb_000599_250 Hb_000003_230 Hb_000003_230 Hb_001489_080--Hb_000003_230 Hb_002169_040 Hb_002169_040 Hb_001489_080--Hb_002169_040 Hb_002183_060 Hb_002183_060 Hb_000421_220--Hb_002183_060 Hb_025240_040 Hb_025240_040 Hb_000421_220--Hb_025240_040 Hb_001234_100 Hb_001234_100 Hb_000421_220--Hb_001234_100 Hb_015934_070 Hb_015934_070 Hb_000421_220--Hb_015934_070 Hb_000477_060 Hb_000477_060 Hb_003697_040--Hb_000477_060 Hb_003605_090 Hb_003605_090 Hb_003697_040--Hb_003605_090 Hb_003053_020 Hb_003053_020 Hb_003697_040--Hb_003053_020 Hb_004889_010 Hb_004889_010 Hb_003697_040--Hb_004889_010 Hb_003697_040--Hb_000783_020 Hb_000985_030--Hb_002169_040 Hb_000985_030--Hb_000783_020 Hb_000777_040 Hb_000777_040 Hb_000985_030--Hb_000777_040 Hb_005269_070 Hb_005269_070 Hb_000985_030--Hb_005269_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.32411 4.15106 6.25758 7.51435 5.54281 7.35703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.5085 10.8665 9.56372 6.29188 7.21757

CAGE analysis