Hb_004889_010

Information

Type -
Description -
Location Contig4889: 17900-27530
Sequence    

Annotation

kegg
ID mtr:MTR_122s0007
description Vacuolar protein sorting-associated protein-like protein
nr
ID XP_003638192.1
description Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
swissprot
ID -
description -
trembl
ID M0RIV7
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0005622
description vacuolar protein sorting-associated protein 20 homolog 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004889_010 0.0 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
2 Hb_005551_040 0.0424298855 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
3 Hb_003697_040 0.0634409882 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
4 Hb_009615_070 0.064773424 - - type X protein phosphatase-II [Populus trichocarpa]
5 Hb_003349_090 0.0662527676 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
6 Hb_034380_020 0.0698317818 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]
7 Hb_089032_030 0.0716838856 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
8 Hb_004934_100 0.0727012401 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002110_200 0.0741399704 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_004899_370 0.0743984771 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
11 Hb_002014_020 0.0746667721 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
12 Hb_007676_080 0.0749322719 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
13 Hb_000336_240 0.0753664791 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
14 Hb_003605_090 0.0762812129 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
15 Hb_000363_360 0.0773939982 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
16 Hb_000599_250 0.0780322168 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
17 Hb_000003_230 0.0783512652 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
18 Hb_000638_250 0.07951352 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_000436_130 0.0798117756 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
20 Hb_007441_040 0.079824232 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]

Gene co-expression network

sample Hb_004889_010 Hb_004889_010 Hb_005551_040 Hb_005551_040 Hb_004889_010--Hb_005551_040 Hb_003697_040 Hb_003697_040 Hb_004889_010--Hb_003697_040 Hb_009615_070 Hb_009615_070 Hb_004889_010--Hb_009615_070 Hb_003349_090 Hb_003349_090 Hb_004889_010--Hb_003349_090 Hb_034380_020 Hb_034380_020 Hb_004889_010--Hb_034380_020 Hb_089032_030 Hb_089032_030 Hb_004889_010--Hb_089032_030 Hb_005551_040--Hb_034380_020 Hb_024650_070 Hb_024650_070 Hb_005551_040--Hb_024650_070 Hb_007676_080 Hb_007676_080 Hb_005551_040--Hb_007676_080 Hb_010361_010 Hb_010361_010 Hb_005551_040--Hb_010361_010 Hb_002014_020 Hb_002014_020 Hb_005551_040--Hb_002014_020 Hb_000477_060 Hb_000477_060 Hb_003697_040--Hb_000477_060 Hb_003605_090 Hb_003605_090 Hb_003697_040--Hb_003605_090 Hb_003053_020 Hb_003053_020 Hb_003697_040--Hb_003053_020 Hb_004934_100 Hb_004934_100 Hb_003697_040--Hb_004934_100 Hb_000783_020 Hb_000783_020 Hb_003697_040--Hb_000783_020 Hb_023278_020 Hb_023278_020 Hb_009615_070--Hb_023278_020 Hb_009615_070--Hb_003605_090 Hb_007009_010 Hb_007009_010 Hb_009615_070--Hb_007009_010 Hb_004899_370 Hb_004899_370 Hb_009615_070--Hb_004899_370 Hb_009615_070--Hb_089032_030 Hb_010812_120 Hb_010812_120 Hb_003349_090--Hb_010812_120 Hb_004837_160 Hb_004837_160 Hb_003349_090--Hb_004837_160 Hb_028515_010 Hb_028515_010 Hb_003349_090--Hb_028515_010 Hb_000373_130 Hb_000373_130 Hb_003349_090--Hb_000373_130 Hb_003349_090--Hb_089032_030 Hb_001489_080 Hb_001489_080 Hb_034380_020--Hb_001489_080 Hb_034380_020--Hb_002014_020 Hb_007416_060 Hb_007416_060 Hb_034380_020--Hb_007416_060 Hb_034380_020--Hb_003697_040 Hb_089032_030--Hb_010812_120 Hb_003502_060 Hb_003502_060 Hb_089032_030--Hb_003502_060 Hb_010423_030 Hb_010423_030 Hb_089032_030--Hb_010423_030 Hb_001545_170 Hb_001545_170 Hb_089032_030--Hb_001545_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.7454 2.25688 4.55137 5.65303 2.62963 5.35254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.73993 9.76487 7.84969 4.88859 3.99531

CAGE analysis