Hb_001545_170

Information

Type -
Description -
Location Contig1545: 198239-208277
Sequence    

Annotation

kegg
ID rcu:RCOM_0297330
description mRNA splicing factor, putative
nr
ID XP_012089890.1
description PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
swissprot
ID Q9M9G6
description Cleavage stimulating factor 64 OS=Arabidopsis thaliana GN=CSTF64 PE=1 SV=1
trembl
ID A0A067JIV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01932 PE=4 SV=1
Gene Ontology
ID GO:0000166
description cleavage stimulation factor subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13377: 198498-198698 , PASA_asmbl_13378: 198957-203896 , PASA_asmbl_13379: 203945-208276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_170 0.0 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
2 Hb_012490_070 0.0535848759 - - conserved hypothetical protein [Ricinus communis]
3 Hb_089032_030 0.0709390737 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
4 Hb_000120_460 0.072829766 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
5 Hb_003349_090 0.0733941925 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
6 Hb_010812_120 0.0740489337 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
7 Hb_002676_090 0.0741130862 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
8 Hb_003697_040 0.0742224929 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
9 Hb_005305_150 0.0758067246 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
10 Hb_002183_060 0.0759706149 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
11 Hb_000016_160 0.0764347737 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
12 Hb_004767_080 0.0765186152 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
13 Hb_005188_080 0.077309063 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
14 Hb_001195_200 0.0773359386 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
15 Hb_003994_260 0.0783878046 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
16 Hb_001222_080 0.078640143 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
17 Hb_000250_060 0.0800863389 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
18 Hb_005914_170 0.0811673637 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
19 Hb_010423_030 0.0831580829 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
20 Hb_001633_210 0.083202517 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001545_170 Hb_001545_170 Hb_012490_070 Hb_012490_070 Hb_001545_170--Hb_012490_070 Hb_089032_030 Hb_089032_030 Hb_001545_170--Hb_089032_030 Hb_000120_460 Hb_000120_460 Hb_001545_170--Hb_000120_460 Hb_003349_090 Hb_003349_090 Hb_001545_170--Hb_003349_090 Hb_010812_120 Hb_010812_120 Hb_001545_170--Hb_010812_120 Hb_002676_090 Hb_002676_090 Hb_001545_170--Hb_002676_090 Hb_000250_060 Hb_000250_060 Hb_012490_070--Hb_000250_060 Hb_005539_280 Hb_005539_280 Hb_012490_070--Hb_005539_280 Hb_012490_070--Hb_000120_460 Hb_002197_050 Hb_002197_050 Hb_012490_070--Hb_002197_050 Hb_000258_260 Hb_000258_260 Hb_012490_070--Hb_000258_260 Hb_089032_030--Hb_010812_120 Hb_003502_060 Hb_003502_060 Hb_089032_030--Hb_003502_060 Hb_089032_030--Hb_003349_090 Hb_009615_070 Hb_009615_070 Hb_089032_030--Hb_009615_070 Hb_010423_030 Hb_010423_030 Hb_089032_030--Hb_010423_030 Hb_000976_170 Hb_000976_170 Hb_000120_460--Hb_000976_170 Hb_025240_040 Hb_025240_040 Hb_000120_460--Hb_025240_040 Hb_004218_110 Hb_004218_110 Hb_000120_460--Hb_004218_110 Hb_003697_040 Hb_003697_040 Hb_000120_460--Hb_003697_040 Hb_108350_010 Hb_108350_010 Hb_000120_460--Hb_108350_010 Hb_003349_090--Hb_010812_120 Hb_004837_160 Hb_004837_160 Hb_003349_090--Hb_004837_160 Hb_028515_010 Hb_028515_010 Hb_003349_090--Hb_028515_010 Hb_000373_130 Hb_000373_130 Hb_003349_090--Hb_000373_130 Hb_004889_010 Hb_004889_010 Hb_003349_090--Hb_004889_010 Hb_001633_210 Hb_001633_210 Hb_010812_120--Hb_001633_210 Hb_010812_120--Hb_000250_060 Hb_000016_160 Hb_000016_160 Hb_010812_120--Hb_000016_160 Hb_003994_260 Hb_003994_260 Hb_010812_120--Hb_003994_260 Hb_004567_120 Hb_004567_120 Hb_002676_090--Hb_004567_120 Hb_005568_120 Hb_005568_120 Hb_002676_090--Hb_005568_120 Hb_004143_150 Hb_004143_150 Hb_002676_090--Hb_004143_150 Hb_004899_370 Hb_004899_370 Hb_002676_090--Hb_004899_370 Hb_000107_160 Hb_000107_160 Hb_002676_090--Hb_000107_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.06604 3.2675 2.53855 3.98492 2.68586 4.31925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.86202 9.47049 6.22332 5.86083 3.97744

CAGE analysis