Hb_002676_090

Information

Type -
Description -
Location Contig2676: 83901-96331
Sequence    

Annotation

kegg
ID pop:POPTR_0002s23710g
description POPTRDRAFT_816875; chloroplast inner membrane import protein Tic22
nr
ID XP_012078441.1
description PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
swissprot
ID F4J469
description Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana GN=TIC22L PE=3 SV=1
trembl
ID A0A067KL92
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13129 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27874: 84188-96228
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002676_090 0.0 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
2 Hb_004567_120 0.0639313912 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
3 Hb_005568_120 0.0646866443 - - Prephenate dehydratase [Hevea brasiliensis]
4 Hb_004143_150 0.0695553885 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
5 Hb_004899_370 0.0698868419 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
6 Hb_000107_160 0.0716112397 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
7 Hb_001545_170 0.0741130862 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
8 Hb_000327_060 0.0755124469 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
9 Hb_006541_010 0.0757391609 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
10 Hb_000920_110 0.0763664468 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
11 Hb_003349_090 0.0776764209 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
12 Hb_001616_040 0.0779173867 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
13 Hb_028515_010 0.07891782 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
14 Hb_004127_020 0.0800670795 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
15 Hb_000384_100 0.081096099 - - hydrolase, putative [Ricinus communis]
16 Hb_033642_080 0.0829816474 - - V-type proton ATPase subunit E [Hevea brasiliensis]
17 Hb_007576_170 0.0833571877 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004216_050 0.0840823724 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
19 Hb_000680_140 0.0841264816 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
20 Hb_000340_570 0.0853257756 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]

Gene co-expression network

sample Hb_002676_090 Hb_002676_090 Hb_004567_120 Hb_004567_120 Hb_002676_090--Hb_004567_120 Hb_005568_120 Hb_005568_120 Hb_002676_090--Hb_005568_120 Hb_004143_150 Hb_004143_150 Hb_002676_090--Hb_004143_150 Hb_004899_370 Hb_004899_370 Hb_002676_090--Hb_004899_370 Hb_000107_160 Hb_000107_160 Hb_002676_090--Hb_000107_160 Hb_001545_170 Hb_001545_170 Hb_002676_090--Hb_001545_170 Hb_004216_050 Hb_004216_050 Hb_004567_120--Hb_004216_050 Hb_006478_150 Hb_006478_150 Hb_004567_120--Hb_006478_150 Hb_004567_120--Hb_005568_120 Hb_011644_030 Hb_011644_030 Hb_004567_120--Hb_011644_030 Hb_000136_170 Hb_000136_170 Hb_004567_120--Hb_000136_170 Hb_028515_010 Hb_028515_010 Hb_005568_120--Hb_028515_010 Hb_011173_050 Hb_011173_050 Hb_005568_120--Hb_011173_050 Hb_012114_040 Hb_012114_040 Hb_005568_120--Hb_012114_040 Hb_000373_130 Hb_000373_130 Hb_005568_120--Hb_000373_130 Hb_004143_150--Hb_004899_370 Hb_000001_060 Hb_000001_060 Hb_004143_150--Hb_000001_060 Hb_000920_110 Hb_000920_110 Hb_004143_150--Hb_000920_110 Hb_004127_020 Hb_004127_020 Hb_004143_150--Hb_004127_020 Hb_006615_240 Hb_006615_240 Hb_004143_150--Hb_006615_240 Hb_004102_110 Hb_004102_110 Hb_004143_150--Hb_004102_110 Hb_023278_020 Hb_023278_020 Hb_004899_370--Hb_023278_020 Hb_004899_370--Hb_000001_060 Hb_003151_040 Hb_003151_040 Hb_004899_370--Hb_003151_040 Hb_004899_370--Hb_004127_020 Hb_009615_070 Hb_009615_070 Hb_004899_370--Hb_009615_070 Hb_012423_030 Hb_012423_030 Hb_000107_160--Hb_012423_030 Hb_012675_050 Hb_012675_050 Hb_000107_160--Hb_012675_050 Hb_008453_030 Hb_008453_030 Hb_000107_160--Hb_008453_030 Hb_000107_160--Hb_004143_150 Hb_004324_270 Hb_004324_270 Hb_000107_160--Hb_004324_270 Hb_012490_070 Hb_012490_070 Hb_001545_170--Hb_012490_070 Hb_089032_030 Hb_089032_030 Hb_001545_170--Hb_089032_030 Hb_000120_460 Hb_000120_460 Hb_001545_170--Hb_000120_460 Hb_003349_090 Hb_003349_090 Hb_001545_170--Hb_003349_090 Hb_010812_120 Hb_010812_120 Hb_001545_170--Hb_010812_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8872 15.1598 14.7501 17.9952 13.2258 22.91
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.692 56.2113 32.9786 20.9157 18.8222

CAGE analysis