Hb_012423_030

Information

Type -
Description -
Location Contig12423: 39876-48933
Sequence    

Annotation

kegg
ID rcu:RCOM_1681430
description sodium-bile acid cotransporter, putative
nr
ID XP_012087065.1
description PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q8VYY4
description Probable sodium/metabolite cotransporter BASS6, chloroplastic OS=Arabidopsis thaliana GN=BASS6 PE=2 SV=1
trembl
ID A0A067JNV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20728 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable sodium metabolite cotransporter chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07368: 39880-44172 , PASA_asmbl_07369: 43867-44172 , PASA_asmbl_07370: 39907-44172 , PASA_asmbl_07375: 44955-48407 , PASA_asmbl_07376: 46905-47117
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012423_030 0.0 - - PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000107_160 0.0574202485 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
3 Hb_008453_030 0.0767921425 - - Thioredoxin superfamily protein [Theobroma cacao]
4 Hb_000327_060 0.077257439 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
5 Hb_004324_270 0.0792054853 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
6 Hb_029879_130 0.0794867667 - - Derlin-2, putative [Ricinus communis]
7 Hb_012675_050 0.0804579299 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001195_200 0.0806140238 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
9 Hb_002408_020 0.0806933196 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
10 Hb_003768_030 0.0809287237 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
11 Hb_009803_050 0.0836566507 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
12 Hb_079312_010 0.0840506123 - - conserved hypothetical protein [Ricinus communis]
13 Hb_158445_010 0.0841181005 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
14 Hb_004837_160 0.0843288711 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
15 Hb_011381_080 0.0860312411 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
16 Hb_001545_160 0.0864812381 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC102615208 isoform X1 [Citrus sinensis]
17 Hb_003697_040 0.0867595782 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
18 Hb_000436_130 0.0893612857 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
19 Hb_006420_080 0.0905358922 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_000783_020 0.0914087417 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_012423_030 Hb_012423_030 Hb_000107_160 Hb_000107_160 Hb_012423_030--Hb_000107_160 Hb_008453_030 Hb_008453_030 Hb_012423_030--Hb_008453_030 Hb_000327_060 Hb_000327_060 Hb_012423_030--Hb_000327_060 Hb_004324_270 Hb_004324_270 Hb_012423_030--Hb_004324_270 Hb_029879_130 Hb_029879_130 Hb_012423_030--Hb_029879_130 Hb_012675_050 Hb_012675_050 Hb_012423_030--Hb_012675_050 Hb_000107_160--Hb_012675_050 Hb_000107_160--Hb_008453_030 Hb_004143_150 Hb_004143_150 Hb_000107_160--Hb_004143_150 Hb_002676_090 Hb_002676_090 Hb_000107_160--Hb_002676_090 Hb_000107_160--Hb_004324_270 Hb_004934_100 Hb_004934_100 Hb_008453_030--Hb_004934_100 Hb_000421_220 Hb_000421_220 Hb_008453_030--Hb_000421_220 Hb_000061_210 Hb_000061_210 Hb_008453_030--Hb_000061_210 Hb_000373_070 Hb_000373_070 Hb_008453_030--Hb_000373_070 Hb_000081_160 Hb_000081_160 Hb_008453_030--Hb_000081_160 Hb_158445_010 Hb_158445_010 Hb_000327_060--Hb_158445_010 Hb_000327_060--Hb_004143_150 Hb_001545_160 Hb_001545_160 Hb_000327_060--Hb_001545_160 Hb_005162_060 Hb_005162_060 Hb_000327_060--Hb_005162_060 Hb_000327_060--Hb_002676_090 Hb_011457_050 Hb_011457_050 Hb_004324_270--Hb_011457_050 Hb_000046_050 Hb_000046_050 Hb_004324_270--Hb_000046_050 Hb_005446_010 Hb_005446_010 Hb_004324_270--Hb_005446_010 Hb_002408_020 Hb_002408_020 Hb_004324_270--Hb_002408_020 Hb_003768_030 Hb_003768_030 Hb_004324_270--Hb_003768_030 Hb_002183_060 Hb_002183_060 Hb_004324_270--Hb_002183_060 Hb_000260_030 Hb_000260_030 Hb_029879_130--Hb_000260_030 Hb_004109_170 Hb_004109_170 Hb_029879_130--Hb_004109_170 Hb_004635_100 Hb_004635_100 Hb_029879_130--Hb_004635_100 Hb_001902_140 Hb_001902_140 Hb_029879_130--Hb_001902_140 Hb_000614_160 Hb_000614_160 Hb_029879_130--Hb_000614_160 Hb_029879_130--Hb_002408_020 Hb_011909_100 Hb_011909_100 Hb_012675_050--Hb_011909_100 Hb_012675_050--Hb_000061_210 Hb_012675_050--Hb_000046_050 Hb_103118_010 Hb_103118_010 Hb_012675_050--Hb_103118_010 Hb_012675_050--Hb_002408_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.88577 5.24513 4.603 6.63184 5.77784 5.62198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5118 14.0857 12.0114 6.15028 9.67779

CAGE analysis