Hb_000614_160

Information

Type -
Description -
Location Contig614: 93531-99326
Sequence    

Annotation

kegg
ID rcu:RCOM_1081940
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012085632.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
swissprot
ID Q9M8W9
description Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2 SV=2
trembl
ID A0A067JSC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17925 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51129: 93584-94666 , PASA_asmbl_51131: 94671-95432 , PASA_asmbl_51132: 91388-99337
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000614_160 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
2 Hb_007389_010 0.0639031598 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
3 Hb_000260_030 0.0658586526 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
4 Hb_005496_140 0.0660240042 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012019_010 0.0679474779 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
6 Hb_000614_220 0.0681735638 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
7 Hb_002046_180 0.0700656343 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
8 Hb_004109_170 0.0705916641 - - PREDICTED: probable ribokinase [Jatropha curcas]
9 Hb_075449_010 0.0726969016 - - PREDICTED: cysteine synthase 2-like [Jatropha curcas]
10 Hb_029879_130 0.0728083337 - - Derlin-2, putative [Ricinus communis]
11 Hb_000866_260 0.0739323702 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
12 Hb_003052_190 0.0751922413 - - PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
13 Hb_000676_180 0.0772062105 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
14 Hb_032264_070 0.0783657844 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
15 Hb_000703_350 0.0785429546 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
16 Hb_000336_150 0.0787249482 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
17 Hb_002799_110 0.0787318833 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
18 Hb_000729_030 0.0789594487 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
19 Hb_000684_470 0.0798313941 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
20 Hb_017358_030 0.0807908785 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000614_160 Hb_000614_160 Hb_007389_010 Hb_007389_010 Hb_000614_160--Hb_007389_010 Hb_000260_030 Hb_000260_030 Hb_000614_160--Hb_000260_030 Hb_005496_140 Hb_005496_140 Hb_000614_160--Hb_005496_140 Hb_012019_010 Hb_012019_010 Hb_000614_160--Hb_012019_010 Hb_000614_220 Hb_000614_220 Hb_000614_160--Hb_000614_220 Hb_002046_180 Hb_002046_180 Hb_000614_160--Hb_002046_180 Hb_000866_260 Hb_000866_260 Hb_007389_010--Hb_000866_260 Hb_017358_030 Hb_017358_030 Hb_007389_010--Hb_017358_030 Hb_000866_010 Hb_000866_010 Hb_007389_010--Hb_000866_010 Hb_002235_250 Hb_002235_250 Hb_007389_010--Hb_002235_250 Hb_032264_070 Hb_032264_070 Hb_007389_010--Hb_032264_070 Hb_050514_010 Hb_050514_010 Hb_000260_030--Hb_050514_010 Hb_004109_170 Hb_004109_170 Hb_000260_030--Hb_004109_170 Hb_029879_130 Hb_029879_130 Hb_000260_030--Hb_029879_130 Hb_000827_050 Hb_000827_050 Hb_000260_030--Hb_000827_050 Hb_001300_150 Hb_001300_150 Hb_000260_030--Hb_001300_150 Hb_002863_050 Hb_002863_050 Hb_005496_140--Hb_002863_050 Hb_005496_140--Hb_002235_250 Hb_000375_350 Hb_000375_350 Hb_005496_140--Hb_000375_350 Hb_001252_130 Hb_001252_130 Hb_005496_140--Hb_001252_130 Hb_017895_040 Hb_017895_040 Hb_005496_140--Hb_017895_040 Hb_003416_010 Hb_003416_010 Hb_005496_140--Hb_003416_010 Hb_012019_010--Hb_002046_180 Hb_005463_100 Hb_005463_100 Hb_012019_010--Hb_005463_100 Hb_005779_060 Hb_005779_060 Hb_012019_010--Hb_005779_060 Hb_000876_070 Hb_000876_070 Hb_012019_010--Hb_000876_070 Hb_002110_150 Hb_002110_150 Hb_012019_010--Hb_002110_150 Hb_002799_110 Hb_002799_110 Hb_000614_220--Hb_002799_110 Hb_027654_060 Hb_027654_060 Hb_000614_220--Hb_027654_060 Hb_000510_290 Hb_000510_290 Hb_000614_220--Hb_000510_290 Hb_012675_050 Hb_012675_050 Hb_000614_220--Hb_012675_050 Hb_012114_070 Hb_012114_070 Hb_000614_220--Hb_012114_070 Hb_002046_180--Hb_002110_150 Hb_002046_180--Hb_005779_060 Hb_002046_180--Hb_000876_070 Hb_008725_260 Hb_008725_260 Hb_002046_180--Hb_008725_260 Hb_002046_180--Hb_005463_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.70109 2.63062 3.30287 2.96079 2.96274 2.98846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.90083 6.47931 5.08131 2.10925 4.05582

CAGE analysis