Hb_000827_050

Information

Type -
Description -
Location Contig827: 86368-91446
Sequence    

Annotation

kegg
ID egr:104424861
description tyrosine--tRNA ligase, cytoplasmic-like
nr
ID XP_012075414.1
description PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
swissprot
ID Q5UPJ7
description Tyrosine--tRNA ligase OS=Acanthamoeba polyphaga mimivirus GN=YARS PE=1 SV=1
trembl
ID A0A067KJH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10687 PE=4 SV=1
Gene Ontology
ID GO:0004831
description tyrosine--trna cytoplasmic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59732: 86359-92220
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000827_050 0.0 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
2 Hb_000236_040 0.0566251233 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
3 Hb_050514_010 0.0581797078 - - hypothetical protein 29 [Hevea brasiliensis]
4 Hb_004109_170 0.0615838826 - - PREDICTED: probable ribokinase [Jatropha curcas]
5 Hb_000260_030 0.0634075482 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
6 Hb_000003_230 0.0667910975 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
7 Hb_000205_090 0.0683638508 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
8 Hb_003813_030 0.0699987596 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
9 Hb_010361_010 0.0716294688 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
10 Hb_026889_030 0.0734027269 - - protein with unknown function [Ricinus communis]
11 Hb_006615_240 0.0745486402 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
12 Hb_003582_060 0.0746283135 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
13 Hb_003304_020 0.0762854751 - - Polyadenylate-binding protein RBP47C [Glycine soja]
14 Hb_001489_080 0.0768231345 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
15 Hb_004058_030 0.0771021493 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
16 Hb_000985_030 0.0776485104 - - PREDICTED: RRP15-like protein [Populus euphratica]
17 Hb_003086_150 0.0787964534 - - PREDICTED: uncharacterized protein LOC105635789 [Jatropha curcas]
18 Hb_005446_010 0.0795366416 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]
19 Hb_000329_200 0.0799659238 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
20 Hb_002871_190 0.0801456278 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]

Gene co-expression network

sample Hb_000827_050 Hb_000827_050 Hb_000236_040 Hb_000236_040 Hb_000827_050--Hb_000236_040 Hb_050514_010 Hb_050514_010 Hb_000827_050--Hb_050514_010 Hb_004109_170 Hb_004109_170 Hb_000827_050--Hb_004109_170 Hb_000260_030 Hb_000260_030 Hb_000827_050--Hb_000260_030 Hb_000003_230 Hb_000003_230 Hb_000827_050--Hb_000003_230 Hb_000205_090 Hb_000205_090 Hb_000827_050--Hb_000205_090 Hb_000236_040--Hb_000205_090 Hb_001633_050 Hb_001633_050 Hb_000236_040--Hb_001633_050 Hb_002014_020 Hb_002014_020 Hb_000236_040--Hb_002014_020 Hb_003304_020 Hb_003304_020 Hb_000236_040--Hb_003304_020 Hb_004058_030 Hb_004058_030 Hb_000236_040--Hb_004058_030 Hb_050514_010--Hb_000260_030 Hb_001300_150 Hb_001300_150 Hb_050514_010--Hb_001300_150 Hb_003728_060 Hb_003728_060 Hb_050514_010--Hb_003728_060 Hb_050514_010--Hb_004109_170 Hb_000465_160 Hb_000465_160 Hb_050514_010--Hb_000465_160 Hb_004109_170--Hb_000205_090 Hb_000580_090 Hb_000580_090 Hb_004109_170--Hb_000580_090 Hb_004109_170--Hb_000260_030 Hb_118419_010 Hb_118419_010 Hb_004109_170--Hb_118419_010 Hb_012286_030 Hb_012286_030 Hb_004109_170--Hb_012286_030 Hb_006615_240 Hb_006615_240 Hb_004109_170--Hb_006615_240 Hb_029879_130 Hb_029879_130 Hb_000260_030--Hb_029879_130 Hb_000260_030--Hb_001300_150 Hb_000614_160 Hb_000614_160 Hb_000260_030--Hb_000614_160 Hb_007676_080 Hb_007676_080 Hb_000003_230--Hb_007676_080 Hb_000003_230--Hb_003304_020 Hb_003582_060 Hb_003582_060 Hb_000003_230--Hb_003582_060 Hb_006573_190 Hb_006573_190 Hb_000003_230--Hb_006573_190 Hb_000003_230--Hb_006615_240 Hb_000003_230--Hb_004058_030 Hb_010098_050 Hb_010098_050 Hb_000205_090--Hb_010098_050 Hb_000205_090--Hb_118419_010 Hb_000656_240 Hb_000656_240 Hb_000205_090--Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_000205_090--Hb_004116_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.6587 10.6704 26.5107 18.4137 16.2448 16.7811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.5933 40.053 36.5931 19.84 19.6659

CAGE analysis