Hb_000580_090

Information

Type -
Description -
Location Contig580: 45277-51098
Sequence    

Annotation

kegg
ID pvu:PHAVU_010G084500g
description hypothetical protein
nr
ID XP_012083588.1
description PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
swissprot
ID Q5EAR5
description tRNA 2'-phosphotransferase 1 OS=Danio rerio GN=trpt1 PE=2 SV=2
trembl
ID A0A067K926
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14536 PE=4 SV=1
Gene Ontology
ID GO:0000215
description trna 2 -phosphotransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49834: 49299-51065 , PASA_asmbl_49835: 45273-51021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_090 0.0 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
2 Hb_004109_170 0.0539223045 - - PREDICTED: probable ribokinase [Jatropha curcas]
3 Hb_012286_030 0.0581251008 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
4 Hb_000656_240 0.0610942232 - - proteasome subunit alpha type, putative [Ricinus communis]
5 Hb_004116_190 0.0629348196 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
6 Hb_000815_320 0.0633297578 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
7 Hb_001105_030 0.0636697788 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
8 Hb_003813_030 0.0642845984 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
9 Hb_002995_020 0.0646101576 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
10 Hb_118419_010 0.0663322523 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
11 Hb_001633_050 0.0689727275 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
12 Hb_001821_010 0.0696095203 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
13 Hb_001195_480 0.0697880967 - - cop9 complex subunit, putative [Ricinus communis]
14 Hb_000527_060 0.0742740247 - - Protein C20orf11, putative [Ricinus communis]
15 Hb_000020_060 0.0743148831 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
16 Hb_000205_090 0.0747519951 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
17 Hb_000059_370 0.0762325229 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
18 Hb_011344_210 0.0767163034 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
19 Hb_001123_130 0.0769048119 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
20 Hb_004108_070 0.077943061 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000580_090 Hb_000580_090 Hb_004109_170 Hb_004109_170 Hb_000580_090--Hb_004109_170 Hb_012286_030 Hb_012286_030 Hb_000580_090--Hb_012286_030 Hb_000656_240 Hb_000656_240 Hb_000580_090--Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_000580_090--Hb_004116_190 Hb_000815_320 Hb_000815_320 Hb_000580_090--Hb_000815_320 Hb_001105_030 Hb_001105_030 Hb_000580_090--Hb_001105_030 Hb_000205_090 Hb_000205_090 Hb_004109_170--Hb_000205_090 Hb_000260_030 Hb_000260_030 Hb_004109_170--Hb_000260_030 Hb_118419_010 Hb_118419_010 Hb_004109_170--Hb_118419_010 Hb_004109_170--Hb_012286_030 Hb_006615_240 Hb_006615_240 Hb_004109_170--Hb_006615_240 Hb_000527_060 Hb_000527_060 Hb_012286_030--Hb_000527_060 Hb_000676_180 Hb_000676_180 Hb_012286_030--Hb_000676_180 Hb_012286_030--Hb_004116_190 Hb_005846_040 Hb_005846_040 Hb_012286_030--Hb_005846_040 Hb_000656_240--Hb_004116_190 Hb_001504_110 Hb_001504_110 Hb_000656_240--Hb_001504_110 Hb_001195_480 Hb_001195_480 Hb_000656_240--Hb_001195_480 Hb_011512_070 Hb_011512_070 Hb_000656_240--Hb_011512_070 Hb_008554_060 Hb_008554_060 Hb_000656_240--Hb_008554_060 Hb_001633_050 Hb_001633_050 Hb_004116_190--Hb_001633_050 Hb_002995_020 Hb_002995_020 Hb_004116_190--Hb_002995_020 Hb_000020_060 Hb_000020_060 Hb_004116_190--Hb_000020_060 Hb_004116_190--Hb_000676_180 Hb_004116_190--Hb_005846_040 Hb_001821_010 Hb_001821_010 Hb_000815_320--Hb_001821_010 Hb_001662_070 Hb_001662_070 Hb_000815_320--Hb_001662_070 Hb_000815_320--Hb_001195_480 Hb_000815_320--Hb_004116_190 Hb_005054_060 Hb_005054_060 Hb_000815_320--Hb_005054_060 Hb_000059_370 Hb_000059_370 Hb_001105_030--Hb_000059_370 Hb_001105_030--Hb_001821_010 Hb_012725_050 Hb_012725_050 Hb_001105_030--Hb_012725_050 Hb_001157_020 Hb_001157_020 Hb_001105_030--Hb_001157_020 Hb_001105_030--Hb_000815_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.47164 4.98104 10.0773 7.16224 9.9451 8.23183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1837 15.9137 12.1179 6.57914 5.17587

CAGE analysis