Hb_001662_070

Information

Type -
Description -
Location Contig1662: 83593-86653
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10860g
description hypothetical protein
nr
ID XP_012065334.1
description PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
swissprot
ID Q8L540
description Thiol-disulfide oxidoreductase LTO1 OS=Arabidopsis thaliana GN=LTO1 PE=1 SV=1
trembl
ID A0A067LHR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22341 PE=4 SV=1
Gene Ontology
ID GO:0009507
description thiol-disulfide oxidoreductase lto1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15329: 83595-86610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001662_070 0.0 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
2 Hb_025645_010 0.0518172543 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
3 Hb_000815_320 0.0518324637 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
4 Hb_000787_050 0.0572461136 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
5 Hb_165132_010 0.0652613499 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
6 Hb_001821_010 0.0669678326 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
7 Hb_000347_540 0.0678106405 - - protein binding protein, putative [Ricinus communis]
8 Hb_001269_680 0.0687886785 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
9 Hb_145880_030 0.0693451821 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
10 Hb_001328_040 0.0705256409 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
11 Hb_007477_070 0.0724823375 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
12 Hb_004116_190 0.0732783941 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
13 Hb_000251_070 0.0736655033 - - hypothetical protein L484_010641 [Morus notabilis]
14 Hb_001195_480 0.0747488742 - - cop9 complex subunit, putative [Ricinus communis]
15 Hb_001579_030 0.0749977416 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
16 Hb_001157_020 0.0767429988 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
17 Hb_001534_120 0.0769333402 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
18 Hb_000331_080 0.0772179115 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
19 Hb_005186_050 0.0782492094 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
20 Hb_003607_150 0.0788014569 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]

Gene co-expression network

sample Hb_001662_070 Hb_001662_070 Hb_025645_010 Hb_025645_010 Hb_001662_070--Hb_025645_010 Hb_000815_320 Hb_000815_320 Hb_001662_070--Hb_000815_320 Hb_000787_050 Hb_000787_050 Hb_001662_070--Hb_000787_050 Hb_165132_010 Hb_165132_010 Hb_001662_070--Hb_165132_010 Hb_001821_010 Hb_001821_010 Hb_001662_070--Hb_001821_010 Hb_000347_540 Hb_000347_540 Hb_001662_070--Hb_000347_540 Hb_000771_120 Hb_000771_120 Hb_025645_010--Hb_000771_120 Hb_025645_010--Hb_000787_050 Hb_003092_040 Hb_003092_040 Hb_025645_010--Hb_003092_040 Hb_001579_030 Hb_001579_030 Hb_025645_010--Hb_001579_030 Hb_007477_070 Hb_007477_070 Hb_025645_010--Hb_007477_070 Hb_000815_320--Hb_001821_010 Hb_001195_480 Hb_001195_480 Hb_000815_320--Hb_001195_480 Hb_000580_090 Hb_000580_090 Hb_000815_320--Hb_000580_090 Hb_004116_190 Hb_004116_190 Hb_000815_320--Hb_004116_190 Hb_005054_060 Hb_005054_060 Hb_000815_320--Hb_005054_060 Hb_002835_240 Hb_002835_240 Hb_000787_050--Hb_002835_240 Hb_000331_080 Hb_000331_080 Hb_000787_050--Hb_000331_080 Hb_118419_010 Hb_118419_010 Hb_000787_050--Hb_118419_010 Hb_004195_270 Hb_004195_270 Hb_000787_050--Hb_004195_270 Hb_134949_020 Hb_134949_020 Hb_165132_010--Hb_134949_020 Hb_002874_190 Hb_002874_190 Hb_165132_010--Hb_002874_190 Hb_033594_110 Hb_033594_110 Hb_165132_010--Hb_033594_110 Hb_002518_050 Hb_002518_050 Hb_165132_010--Hb_002518_050 Hb_002864_050 Hb_002864_050 Hb_165132_010--Hb_002864_050 Hb_001105_030 Hb_001105_030 Hb_001821_010--Hb_001105_030 Hb_000056_200 Hb_000056_200 Hb_001821_010--Hb_000056_200 Hb_012725_050 Hb_012725_050 Hb_001821_010--Hb_012725_050 Hb_002609_020 Hb_002609_020 Hb_001821_010--Hb_002609_020 Hb_004735_040 Hb_004735_040 Hb_001821_010--Hb_004735_040 Hb_000347_540--Hb_001579_030 Hb_000347_540--Hb_000815_320 Hb_000347_540--Hb_000787_050 Hb_004324_070 Hb_004324_070 Hb_000347_540--Hb_004324_070 Hb_000347_540--Hb_025645_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0934 5.02169 9.88434 7.99891 10.4099 10.2104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.632 17.2873 11.8419 5.29654 4.71584

CAGE analysis