Hb_002835_240

Information

Type -
Description -
Location Contig2835: 207353-212536
Sequence    

Annotation

kegg
ID pmum:103337932
description anaphase-promoting complex subunit 15
nr
ID XP_007209792.1
description hypothetical protein PRUPE_ppa013861mg [Prunus persica]
swissprot
ID -
description -
trembl
ID M5WCH3
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013861mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29644: 206261-206544 , PASA_asmbl_29645: 207348-210050 , PASA_asmbl_29646: 207383-212462
cDNA
(Sanger)
(ID:Location)		 038_N22.ab1: 207348-210050

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_240 0.0 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]
2 Hb_000787_050 0.0626883634 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
3 Hb_003057_090 0.0885176007 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
4 Hb_000175_440 0.0911901998 - - signal peptidase family protein [Populus trichocarpa]
5 Hb_012725_050 0.092115992 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
6 Hb_013726_020 0.0921593419 - - ara4-interacting protein, putative [Ricinus communis]
7 Hb_008748_040 0.092551849 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
8 Hb_000046_280 0.0947018558 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
9 Hb_001157_020 0.095270737 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
10 Hb_028227_020 0.0972553049 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
11 Hb_001662_070 0.0973315369 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
12 Hb_000347_540 0.0979128074 - - protein binding protein, putative [Ricinus communis]
13 Hb_118419_010 0.0981138257 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
14 Hb_000777_040 0.0982515503 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
15 Hb_003732_020 0.0986034992 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
16 Hb_000212_330 0.0986252631 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_024682_010 0.0990496638 - - sterol isomerase, putative [Ricinus communis]
18 Hb_000815_320 0.09909521 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
19 Hb_001328_040 0.0996474595 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
20 Hb_008511_130 0.1004451105 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]

Gene co-expression network

sample Hb_002835_240 Hb_002835_240 Hb_000787_050 Hb_000787_050 Hb_002835_240--Hb_000787_050 Hb_003057_090 Hb_003057_090 Hb_002835_240--Hb_003057_090 Hb_000175_440 Hb_000175_440 Hb_002835_240--Hb_000175_440 Hb_012725_050 Hb_012725_050 Hb_002835_240--Hb_012725_050 Hb_013726_020 Hb_013726_020 Hb_002835_240--Hb_013726_020 Hb_008748_040 Hb_008748_040 Hb_002835_240--Hb_008748_040 Hb_001662_070 Hb_001662_070 Hb_000787_050--Hb_001662_070 Hb_025645_010 Hb_025645_010 Hb_000787_050--Hb_025645_010 Hb_000331_080 Hb_000331_080 Hb_000787_050--Hb_000331_080 Hb_118419_010 Hb_118419_010 Hb_000787_050--Hb_118419_010 Hb_004195_270 Hb_004195_270 Hb_000787_050--Hb_004195_270 Hb_005054_060 Hb_005054_060 Hb_003057_090--Hb_005054_060 Hb_001195_480 Hb_001195_480 Hb_003057_090--Hb_001195_480 Hb_000815_320 Hb_000815_320 Hb_003057_090--Hb_000815_320 Hb_003057_090--Hb_118419_010 Hb_002168_060 Hb_002168_060 Hb_003057_090--Hb_002168_060 Hb_000580_090 Hb_000580_090 Hb_003057_090--Hb_000580_090 Hb_003732_020 Hb_003732_020 Hb_000175_440--Hb_003732_020 Hb_000175_440--Hb_000787_050 Hb_000175_440--Hb_025645_010 Hb_002685_140 Hb_002685_140 Hb_000175_440--Hb_002685_140 Hb_000327_120 Hb_000327_120 Hb_000175_440--Hb_000327_120 Hb_001105_030 Hb_001105_030 Hb_012725_050--Hb_001105_030 Hb_001157_020 Hb_001157_020 Hb_012725_050--Hb_001157_020 Hb_001821_010 Hb_001821_010 Hb_012725_050--Hb_001821_010 Hb_028227_020 Hb_028227_020 Hb_012725_050--Hb_028227_020 Hb_002214_040 Hb_002214_040 Hb_012725_050--Hb_002214_040 Hb_012725_050--Hb_000331_080 Hb_000656_040 Hb_000656_040 Hb_013726_020--Hb_000656_040 Hb_000347_540 Hb_000347_540 Hb_013726_020--Hb_000347_540 Hb_013726_020--Hb_000815_320 Hb_002998_060 Hb_002998_060 Hb_013726_020--Hb_002998_060 Hb_013726_020--Hb_002168_060 Hb_000025_470 Hb_000025_470 Hb_008748_040--Hb_000025_470 Hb_005357_080 Hb_005357_080 Hb_008748_040--Hb_005357_080 Hb_000212_330 Hb_000212_330 Hb_008748_040--Hb_000212_330 Hb_054865_120 Hb_054865_120 Hb_008748_040--Hb_054865_120 Hb_000054_090 Hb_000054_090 Hb_008748_040--Hb_000054_090 Hb_011671_040 Hb_011671_040 Hb_008748_040--Hb_011671_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.2617 9.18651 40.7087 30.9528 50.6302 38.3243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.4352 50.4403 52.4729 24.278 31.4646

CAGE analysis