Hb_000175_440

Information

Type -
Description -
Location Contig175: 313599-318454
Sequence    

Annotation

kegg
ID pop:POPTR_0003s06160g
description POPTRDRAFT_817068; signal peptidase family protein
nr
ID XP_002303254.1
description signal peptidase family protein [Populus trichocarpa]
swissprot
ID Q9WTR7
description Signal peptidase complex catalytic subunit SEC11C OS=Rattus norvegicus GN=Sec11c PE=2 SV=3
trembl
ID B9GWC4
description Signal peptidase I OS=Populus trichocarpa GN=POPTR_0003s06160g PE=4 SV=1
Gene Ontology
ID GO:0016021
description signal peptidase complex catalytic subunit sec11a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16714: 313612-318423
cDNA
(Sanger)
(ID:Location)		 032_H05.ab1: 313612-317421 , 038_A04.ab1: 313637-318199 , 045_N02.ab1: 313644-318210

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_440 0.0 - - signal peptidase family protein [Populus trichocarpa]
2 Hb_003732_020 0.0726201129 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
3 Hb_000787_050 0.0788147142 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
4 Hb_025645_010 0.0873496633 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
5 Hb_002685_140 0.0906492421 - - PREDICTED: membrin-11 [Jatropha curcas]
6 Hb_002835_240 0.0911901998 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]
7 Hb_000327_120 0.0917627272 - - FGFR1 oncogene partner, putative [Ricinus communis]
8 Hb_004994_100 0.0937992255 - - acyl-CoA thioesterase, putative [Ricinus communis]
9 Hb_000390_170 0.0949552686 - - PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
10 Hb_000264_240 0.0960317108 - - conserved hypothetical protein [Ricinus communis]
11 Hb_015746_010 0.0997369121 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
12 Hb_000620_010 0.0998764896 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
13 Hb_004907_080 0.0999816962 - - zinc finger protein, putative [Ricinus communis]
14 Hb_002830_030 0.1002971907 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
15 Hb_001360_040 0.1005425867 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
16 Hb_005663_060 0.1024110684 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
17 Hb_000046_280 0.1039497244 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
18 Hb_007951_060 0.1048899303 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
19 Hb_003862_050 0.1054294322 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
20 Hb_000976_430 0.1060555613 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_440 Hb_000175_440 Hb_003732_020 Hb_003732_020 Hb_000175_440--Hb_003732_020 Hb_000787_050 Hb_000787_050 Hb_000175_440--Hb_000787_050 Hb_025645_010 Hb_025645_010 Hb_000175_440--Hb_025645_010 Hb_002685_140 Hb_002685_140 Hb_000175_440--Hb_002685_140 Hb_002835_240 Hb_002835_240 Hb_000175_440--Hb_002835_240 Hb_000327_120 Hb_000327_120 Hb_000175_440--Hb_000327_120 Hb_000264_240 Hb_000264_240 Hb_003732_020--Hb_000264_240 Hb_001360_040 Hb_001360_040 Hb_003732_020--Hb_001360_040 Hb_003732_020--Hb_002685_140 Hb_003732_020--Hb_000787_050 Hb_001135_050 Hb_001135_050 Hb_003732_020--Hb_001135_050 Hb_001662_070 Hb_001662_070 Hb_000787_050--Hb_001662_070 Hb_000787_050--Hb_002835_240 Hb_000787_050--Hb_025645_010 Hb_000331_080 Hb_000331_080 Hb_000787_050--Hb_000331_080 Hb_118419_010 Hb_118419_010 Hb_000787_050--Hb_118419_010 Hb_004195_270 Hb_004195_270 Hb_000787_050--Hb_004195_270 Hb_025645_010--Hb_001662_070 Hb_000771_120 Hb_000771_120 Hb_025645_010--Hb_000771_120 Hb_003092_040 Hb_003092_040 Hb_025645_010--Hb_003092_040 Hb_001579_030 Hb_001579_030 Hb_025645_010--Hb_001579_030 Hb_007477_070 Hb_007477_070 Hb_025645_010--Hb_007477_070 Hb_002685_140--Hb_000327_120 Hb_001439_150 Hb_001439_150 Hb_002685_140--Hb_001439_150 Hb_011689_080 Hb_011689_080 Hb_002685_140--Hb_011689_080 Hb_001623_420 Hb_001623_420 Hb_002685_140--Hb_001623_420 Hb_001635_170 Hb_001635_170 Hb_002685_140--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_002685_140--Hb_007576_040 Hb_003057_090 Hb_003057_090 Hb_002835_240--Hb_003057_090 Hb_012725_050 Hb_012725_050 Hb_002835_240--Hb_012725_050 Hb_013726_020 Hb_013726_020 Hb_002835_240--Hb_013726_020 Hb_008748_040 Hb_008748_040 Hb_002835_240--Hb_008748_040 Hb_007951_060 Hb_007951_060 Hb_000327_120--Hb_007951_060 Hb_000327_120--Hb_001635_170 Hb_054865_100 Hb_054865_100 Hb_000327_120--Hb_054865_100 Hb_001595_030 Hb_001595_030 Hb_000327_120--Hb_001595_030 Hb_006185_050 Hb_006185_050 Hb_000327_120--Hb_006185_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.6007 25.4753 47.2967 30.9603 82.4446 44.0542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.5647 57.963 85.0478 37.9392 28.9247

CAGE analysis