Hb_007576_040

Information

Type -
Description -
Location Contig7576: 13613-16849
Sequence    

Annotation

kegg
ID pop:POPTR_0015s00800g
description POPTRDRAFT_1100598; hypothetical protein
nr
ID XP_011087880.1
description PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID B9IDI7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s00800g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57106: 13417-16828
cDNA
(Sanger)
(ID:Location)		 004_E23.ab1: 13429-16828 , 015_E18.ab1: 14610-16807 , 015_H24.ab1: 13429-16828

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007576_040 0.0 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
2 Hb_010661_030 0.0611515548 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
3 Hb_007951_060 0.0641681154 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
4 Hb_005503_030 0.0669695294 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
5 Hb_063716_050 0.068641719 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
6 Hb_000327_120 0.0703066492 - - FGFR1 oncogene partner, putative [Ricinus communis]
7 Hb_001512_060 0.0703247753 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
8 Hb_002685_140 0.0706690054 - - PREDICTED: membrin-11 [Jatropha curcas]
9 Hb_148912_010 0.0720068871 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000046_280 0.0724192773 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
11 Hb_000494_020 0.0745880088 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
12 Hb_002043_190 0.0751715868 - - rwd domain-containing protein, putative [Ricinus communis]
13 Hb_007477_070 0.0752268656 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
14 Hb_001305_010 0.0757971525 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
15 Hb_001489_060 0.0771671969 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
16 Hb_002233_150 0.0772999359 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
17 Hb_001439_150 0.077501089 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
18 Hb_011689_080 0.0775397576 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
19 Hb_000107_050 0.07766674 - - 60S ribosomal protein L9, putative [Ricinus communis]
20 Hb_003363_110 0.0791701865 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_007576_040 Hb_007576_040 Hb_010661_030 Hb_010661_030 Hb_007576_040--Hb_010661_030 Hb_007951_060 Hb_007951_060 Hb_007576_040--Hb_007951_060 Hb_005503_030 Hb_005503_030 Hb_007576_040--Hb_005503_030 Hb_063716_050 Hb_063716_050 Hb_007576_040--Hb_063716_050 Hb_000327_120 Hb_000327_120 Hb_007576_040--Hb_000327_120 Hb_001512_060 Hb_001512_060 Hb_007576_040--Hb_001512_060 Hb_001635_170 Hb_001635_170 Hb_010661_030--Hb_001635_170 Hb_001404_100 Hb_001404_100 Hb_010661_030--Hb_001404_100 Hb_007154_020 Hb_007154_020 Hb_010661_030--Hb_007154_020 Hb_002233_150 Hb_002233_150 Hb_010661_030--Hb_002233_150 Hb_003069_010 Hb_003069_010 Hb_010661_030--Hb_003069_010 Hb_001305_010 Hb_001305_010 Hb_007951_060--Hb_001305_010 Hb_007951_060--Hb_000327_120 Hb_000926_280 Hb_000926_280 Hb_007951_060--Hb_000926_280 Hb_001439_150 Hb_001439_150 Hb_007951_060--Hb_001439_150 Hb_003417_020 Hb_003417_020 Hb_007951_060--Hb_003417_020 Hb_143629_010 Hb_143629_010 Hb_005503_030--Hb_143629_010 Hb_001006_170 Hb_001006_170 Hb_005503_030--Hb_001006_170 Hb_008887_050 Hb_008887_050 Hb_005503_030--Hb_008887_050 Hb_031527_100 Hb_031527_100 Hb_005503_030--Hb_031527_100 Hb_000666_110 Hb_000666_110 Hb_005503_030--Hb_000666_110 Hb_000103_560 Hb_000103_560 Hb_063716_050--Hb_000103_560 Hb_001489_060 Hb_001489_060 Hb_063716_050--Hb_001489_060 Hb_003050_080 Hb_003050_080 Hb_063716_050--Hb_003050_080 Hb_000529_190 Hb_000529_190 Hb_063716_050--Hb_000529_190 Hb_000832_140 Hb_000832_140 Hb_063716_050--Hb_000832_140 Hb_001604_080 Hb_001604_080 Hb_063716_050--Hb_001604_080 Hb_002685_140 Hb_002685_140 Hb_000327_120--Hb_002685_140 Hb_000327_120--Hb_001635_170 Hb_054865_100 Hb_054865_100 Hb_000327_120--Hb_054865_100 Hb_001595_030 Hb_001595_030 Hb_000327_120--Hb_001595_030 Hb_006185_050 Hb_006185_050 Hb_000327_120--Hb_006185_050 Hb_010921_010 Hb_010921_010 Hb_001512_060--Hb_010921_010 Hb_000362_200 Hb_000362_200 Hb_001512_060--Hb_000362_200 Hb_001534_120 Hb_001534_120 Hb_001512_060--Hb_001534_120 Hb_007477_070 Hb_007477_070 Hb_001512_060--Hb_007477_070 Hb_001512_060--Hb_007154_020 Hb_002346_020 Hb_002346_020 Hb_001512_060--Hb_002346_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
163.711 43.3332 100.586 62.3094 169.674 142.142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
139.986 172.127 121.974 62.389 42.417

CAGE analysis