Hb_001512_060

Information

Type -
Description -
Location Contig1512: 57435-64546
Sequence    

Annotation

kegg
ID vvi:100255888
description pentatricopeptide repeat-containing protein At4g35850, mitochondrial
nr
ID XP_012071702.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
swissprot
ID Q8VYR5
description Pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Arabidopsis thaliana GN=At4g35850 PE=2 SV=1
trembl
ID A0A067LPE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10229 PE=4 SV=1
Gene Ontology
ID GO:0009220
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12803: 58333-58469 , PASA_asmbl_12804: 60024-64350
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001512_060 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
2 Hb_010921_010 0.0553257731 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
3 Hb_000362_200 0.0635524875 - - exonuclease family protein [Populus trichocarpa]
4 Hb_001534_120 0.0641796432 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
5 Hb_007477_070 0.0675907571 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
6 Hb_007154_020 0.0684492598 - - -
7 Hb_002346_020 0.0685790608 - - -
8 Hb_009421_020 0.0690228419 - - PREDICTED: caltractin-like [Jatropha curcas]
9 Hb_007576_040 0.0703247753 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
10 Hb_005186_050 0.0721284096 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
11 Hb_005697_060 0.0731698374 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
12 Hb_001564_130 0.0736165502 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_001489_060 0.0737145271 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
14 Hb_010661_030 0.0747628531 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
15 Hb_028227_020 0.0768317853 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
16 Hb_004449_170 0.0772107306 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
17 Hb_001821_010 0.0775600139 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
18 Hb_006120_070 0.0788384427 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
19 Hb_002043_190 0.0792226616 - - rwd domain-containing protein, putative [Ricinus communis]
20 Hb_001305_010 0.0801428554 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001512_060 Hb_001512_060 Hb_010921_010 Hb_010921_010 Hb_001512_060--Hb_010921_010 Hb_000362_200 Hb_000362_200 Hb_001512_060--Hb_000362_200 Hb_001534_120 Hb_001534_120 Hb_001512_060--Hb_001534_120 Hb_007477_070 Hb_007477_070 Hb_001512_060--Hb_007477_070 Hb_007154_020 Hb_007154_020 Hb_001512_060--Hb_007154_020 Hb_002346_020 Hb_002346_020 Hb_001512_060--Hb_002346_020 Hb_010921_010--Hb_001534_120 Hb_005993_040 Hb_005993_040 Hb_010921_010--Hb_005993_040 Hb_010921_010--Hb_007154_020 Hb_002686_020 Hb_002686_020 Hb_010921_010--Hb_002686_020 Hb_000109_090 Hb_000109_090 Hb_010921_010--Hb_000109_090 Hb_000362_200--Hb_001534_120 Hb_009421_020 Hb_009421_020 Hb_000362_200--Hb_009421_020 Hb_005186_050 Hb_005186_050 Hb_000362_200--Hb_005186_050 Hb_004093_090 Hb_004093_090 Hb_000362_200--Hb_004093_090 Hb_000362_200--Hb_007477_070 Hb_001195_480 Hb_001195_480 Hb_001534_120--Hb_001195_480 Hb_001534_120--Hb_007477_070 Hb_002534_150 Hb_002534_150 Hb_001534_120--Hb_002534_150 Hb_025645_010 Hb_025645_010 Hb_007477_070--Hb_025645_010 Hb_001662_070 Hb_001662_070 Hb_007477_070--Hb_001662_070 Hb_000771_120 Hb_000771_120 Hb_007477_070--Hb_000771_120 Hb_007576_040 Hb_007576_040 Hb_007477_070--Hb_007576_040 Hb_011381_060 Hb_011381_060 Hb_007154_020--Hb_011381_060 Hb_010661_030 Hb_010661_030 Hb_007154_020--Hb_010661_030 Hb_007154_020--Hb_005186_050 Hb_001348_070 Hb_001348_070 Hb_007154_020--Hb_001348_070 Hb_047503_010 Hb_047503_010 Hb_002346_020--Hb_047503_010 Hb_001552_020 Hb_001552_020 Hb_002346_020--Hb_001552_020 Hb_002928_130 Hb_002928_130 Hb_002346_020--Hb_002928_130 Hb_000096_070 Hb_000096_070 Hb_002346_020--Hb_000096_070 Hb_002027_250 Hb_002027_250 Hb_002346_020--Hb_002027_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.6015 7.01291 15.0047 7.71167 20.9461 15.0082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.855 27.441 14.1947 10.0842 8.68694

CAGE analysis