Hb_002027_250

Information

Type -
Description -
Location Contig2027: 133169-137828
Sequence    

Annotation

kegg
ID rcu:RCOM_0646960
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002524769.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID O49343
description Pentatricopeptide repeat-containing protein At2g30780 OS=Arabidopsis thaliana GN=At2g30780 PE=2 SV=1
trembl
ID B9SFK0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0646960 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20702: 133450-134761 , PASA_asmbl_20704: 135364-137527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_250 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_002888_030 0.0573079311 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
3 Hb_002044_080 0.0739369302 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
4 Hb_001552_020 0.0766271071 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
5 Hb_002346_020 0.0767647527 - - -
6 Hb_000096_070 0.0772498543 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
7 Hb_000453_170 0.078170629 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000107_620 0.078286192 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
9 Hb_002496_030 0.0790291776 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
10 Hb_001242_060 0.0800339849 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
11 Hb_002739_100 0.0810686112 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
12 Hb_002876_110 0.0814545255 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000030_300 0.0843395055 - - Thioredoxin, putative [Ricinus communis]
14 Hb_000016_250 0.0844427189 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
15 Hb_017358_030 0.085362415 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
16 Hb_002518_140 0.0856904523 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
17 Hb_005694_110 0.0857313222 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
18 Hb_002928_130 0.0864407298 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
19 Hb_003464_060 0.086467418 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
20 Hb_000853_420 0.0868608341 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002027_250 Hb_002027_250 Hb_002888_030 Hb_002888_030 Hb_002027_250--Hb_002888_030 Hb_002044_080 Hb_002044_080 Hb_002027_250--Hb_002044_080 Hb_001552_020 Hb_001552_020 Hb_002027_250--Hb_001552_020 Hb_002346_020 Hb_002346_020 Hb_002027_250--Hb_002346_020 Hb_000096_070 Hb_000096_070 Hb_002027_250--Hb_000096_070 Hb_000453_170 Hb_000453_170 Hb_002027_250--Hb_000453_170 Hb_017358_030 Hb_017358_030 Hb_002888_030--Hb_017358_030 Hb_002739_100 Hb_002739_100 Hb_002888_030--Hb_002739_100 Hb_002888_030--Hb_002346_020 Hb_047503_010 Hb_047503_010 Hb_002888_030--Hb_047503_010 Hb_005779_060 Hb_005779_060 Hb_002888_030--Hb_005779_060 Hb_000056_200 Hb_000056_200 Hb_002044_080--Hb_000056_200 Hb_058999_020 Hb_058999_020 Hb_002044_080--Hb_058999_020 Hb_006502_090 Hb_006502_090 Hb_002044_080--Hb_006502_090 Hb_001242_060 Hb_001242_060 Hb_002044_080--Hb_001242_060 Hb_000120_790 Hb_000120_790 Hb_002044_080--Hb_000120_790 Hb_000085_050 Hb_000085_050 Hb_002044_080--Hb_000085_050 Hb_028995_040 Hb_028995_040 Hb_001552_020--Hb_028995_040 Hb_029866_090 Hb_029866_090 Hb_001552_020--Hb_029866_090 Hb_001552_020--Hb_002739_100 Hb_000656_400 Hb_000656_400 Hb_001552_020--Hb_000656_400 Hb_002256_030 Hb_002256_030 Hb_001552_020--Hb_002256_030 Hb_001552_020--Hb_002346_020 Hb_002346_020--Hb_047503_010 Hb_001512_060 Hb_001512_060 Hb_002346_020--Hb_001512_060 Hb_002928_130 Hb_002928_130 Hb_002346_020--Hb_002928_130 Hb_002346_020--Hb_000096_070 Hb_000016_250 Hb_000016_250 Hb_000096_070--Hb_000016_250 Hb_000034_100 Hb_000034_100 Hb_000096_070--Hb_000034_100 Hb_002518_280 Hb_002518_280 Hb_000096_070--Hb_002518_280 Hb_003058_190 Hb_003058_190 Hb_000096_070--Hb_003058_190 Hb_000563_320 Hb_000563_320 Hb_000096_070--Hb_000563_320 Hb_002248_080 Hb_002248_080 Hb_000096_070--Hb_002248_080 Hb_011316_050 Hb_011316_050 Hb_000453_170--Hb_011316_050 Hb_002496_030 Hb_002496_030 Hb_000453_170--Hb_002496_030 Hb_006316_040 Hb_006316_040 Hb_000453_170--Hb_006316_040 Hb_004221_020 Hb_004221_020 Hb_000453_170--Hb_004221_020 Hb_000827_070 Hb_000827_070 Hb_000453_170--Hb_000827_070 Hb_000289_060 Hb_000289_060 Hb_000453_170--Hb_000289_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.528 9.17674 6.83739 3.59661 15.2996 12.0866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6913 16.5339 15.3789 7.64262 8.13991

CAGE analysis