Hb_002248_080

Information

Type -
Description -
Location Contig2248: 80743-87333
Sequence    

Annotation

kegg
ID rcu:RCOM_0507780
description ubiquitin conjugating enzyme, putative (EC:6.3.2.19)
nr
ID XP_012084958.1
description PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
swissprot
ID Q9LUQ5
description Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana GN=UBC25 PE=2 SV=1
trembl
ID A0A067JSX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20991 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23360: 80851-86992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002248_080 0.0 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
2 Hb_112798_020 0.0603352096 - - dnajc14 protein, putative [Ricinus communis]
3 Hb_000152_380 0.0628593495 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
4 Hb_000096_070 0.0661881954 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
5 Hb_004310_150 0.0732696191 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
6 Hb_000780_230 0.0735639417 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
7 Hb_031527_040 0.0771042711 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
8 Hb_002477_280 0.0784022296 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Jatropha curcas]
9 Hb_001104_160 0.080419209 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
10 Hb_000538_270 0.0826645764 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
11 Hb_005276_210 0.0830915326 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
12 Hb_000099_080 0.0834011665 - - kinesin light chain, putative [Ricinus communis]
13 Hb_000529_020 0.0834452888 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
14 Hb_000563_320 0.0836167848 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
15 Hb_000402_080 0.0837292576 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
16 Hb_000034_100 0.0846771794 - - dnajc14 protein, putative [Ricinus communis]
17 Hb_001780_020 0.0853302324 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002518_280 0.0855456872 - - phosphate transporter [Manihot esculenta]
19 Hb_005731_130 0.0855927333 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
20 Hb_003058_190 0.0857511662 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002248_080 Hb_002248_080 Hb_112798_020 Hb_112798_020 Hb_002248_080--Hb_112798_020 Hb_000152_380 Hb_000152_380 Hb_002248_080--Hb_000152_380 Hb_000096_070 Hb_000096_070 Hb_002248_080--Hb_000096_070 Hb_004310_150 Hb_004310_150 Hb_002248_080--Hb_004310_150 Hb_000780_230 Hb_000780_230 Hb_002248_080--Hb_000780_230 Hb_031527_040 Hb_031527_040 Hb_002248_080--Hb_031527_040 Hb_004970_090 Hb_004970_090 Hb_112798_020--Hb_004970_090 Hb_017491_030 Hb_017491_030 Hb_112798_020--Hb_017491_030 Hb_000529_020 Hb_000529_020 Hb_112798_020--Hb_000529_020 Hb_000796_210 Hb_000796_210 Hb_112798_020--Hb_000796_210 Hb_000256_190 Hb_000256_190 Hb_112798_020--Hb_000256_190 Hb_002518_280 Hb_002518_280 Hb_000152_380--Hb_002518_280 Hb_000152_380--Hb_004310_150 Hb_000152_380--Hb_000780_230 Hb_010618_010 Hb_010618_010 Hb_000152_380--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_000152_380--Hb_001248_060 Hb_004221_020 Hb_004221_020 Hb_000152_380--Hb_004221_020 Hb_000016_250 Hb_000016_250 Hb_000096_070--Hb_000016_250 Hb_000034_100 Hb_000034_100 Hb_000096_070--Hb_000034_100 Hb_000096_070--Hb_002518_280 Hb_003058_190 Hb_003058_190 Hb_000096_070--Hb_003058_190 Hb_000563_320 Hb_000563_320 Hb_000096_070--Hb_000563_320 Hb_004310_150--Hb_002518_280 Hb_004032_430 Hb_004032_430 Hb_004310_150--Hb_004032_430 Hb_000093_160 Hb_000093_160 Hb_004310_150--Hb_000093_160 Hb_120410_010 Hb_120410_010 Hb_004310_150--Hb_120410_010 Hb_002477_280 Hb_002477_280 Hb_004310_150--Hb_002477_280 Hb_000796_030 Hb_000796_030 Hb_000780_230--Hb_000796_030 Hb_002025_020 Hb_002025_020 Hb_000780_230--Hb_002025_020 Hb_013399_100 Hb_013399_100 Hb_000780_230--Hb_013399_100 Hb_001409_020 Hb_001409_020 Hb_000780_230--Hb_001409_020 Hb_000366_120 Hb_000366_120 Hb_000780_230--Hb_000366_120 Hb_001242_060 Hb_001242_060 Hb_031527_040--Hb_001242_060 Hb_031527_040--Hb_000563_320 Hb_031527_040--Hb_000016_250 Hb_007416_180 Hb_007416_180 Hb_031527_040--Hb_007416_180 Hb_000099_080 Hb_000099_080 Hb_031527_040--Hb_000099_080 Hb_001157_040 Hb_001157_040 Hb_031527_040--Hb_001157_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0106 20.5726 9.95687 11.7023 25.7868 17.1063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6362 21.7142 17.0099 14.8835 8.3089

CAGE analysis